Wall clock time and date at job start Mon Mar 30 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38172 * 120.02308 * 2 1 4 4 C 1.38242 * 120.05426 * 180.02562 * 3 2 1 5 5 C 1.38291 * 120.10934 * 359.96113 * 4 3 2 6 6 C 1.38120 * 120.05825 * 359.97438 * 5 4 3 7 7 C 1.38705 * 120.02982 * 180.26149 * 2 1 3 8 8 O 1.35927 * 120.05966 * 359.97438 * 7 2 1 9 9 C 1.34260 * 117.00032 * 82.08259 * 8 7 2 10 10 O 1.20834 * 120.00321 * 5.54085 * 9 8 7 11 11 C 1.50697 * 120.00157 * 185.54142 * 9 8 7 12 12 C 1.50705 * 109.47361 * 179.97438 * 11 9 8 13 13 H 1.07992 * 119.99687 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99786 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99727 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47366 * 90.00255 * 16 14 12 18 18 H 1.48499 * 109.47358 * 210.00083 * 16 14 12 19 19 H 1.48504 * 109.47078 * 330.00111 * 16 14 12 20 20 H 1.09002 * 109.47705 * 89.99800 * 1 2 3 21 21 H 1.09003 * 109.47233 * 209.99617 * 1 2 3 22 22 H 1.08992 * 109.47768 * 329.99511 * 1 2 3 23 23 H 1.08001 * 119.97292 * 0.02562 * 3 2 1 24 24 H 1.07995 * 119.94886 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.97164 * 180.02562 * 5 4 3 26 26 H 1.08004 * 120.03233 * 180.02562 * 6 5 4 27 27 H 1.08999 * 109.47185 * 300.00245 * 11 9 8 28 28 H 1.09005 * 109.46995 * 59.99747 * 11 9 8 29 29 H 0.97003 * 120.00269 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5807 1.1971 -0.0005 5 6 4.2751 0.0011 -0.0003 6 6 3.5887 -1.1974 0.0011 7 6 2.2011 -1.2008 -0.0055 8 8 1.5233 -2.3791 -0.0103 9 6 1.0761 -2.8201 -1.1969 10 8 1.3677 -2.2295 -2.2100 11 6 0.2104 -4.0517 -1.2655 12 6 -0.1540 -4.3304 -2.7010 13 1 0.2057 -3.6809 -3.4852 14 6 -0.9457 -5.4153 -3.0131 15 7 -1.3833 -6.2064 -2.0581 16 14 -1.3967 -5.7611 -4.7925 17 1 -0.3724 -6.6487 -5.3993 18 1 -2.7231 -6.4267 -4.8466 19 1 -1.4533 -4.4828 -5.5463 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8898 0.5138 23 1 1.6582 2.1316 0.0004 24 1 4.1194 2.1331 -0.0010 25 1 5.3551 0.0043 -0.0003 26 1 4.1314 -2.1312 0.0017 27 1 0.7558 -4.9024 -0.8569 28 1 -0.6981 -3.8900 -0.6852 29 1 -1.9406 -6.9694 -2.2776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:36 Heat of formation + Delta-G solvation = -82.733682 kcal Electronic energy + Delta-G solvation = -14327.099186 eV Core-core repulsion = 11793.469629 eV Total energy + Delta-G solvation = -2533.629556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.27041 -39.73116 -37.68276 -35.25314 -33.74217 -31.84974 -30.84718 -27.98000 -26.32090 -23.93026 -22.93158 -21.59458 -19.17553 -18.36403 -17.87021 -17.69027 -16.84487 -16.37490 -15.77464 -15.38692 -14.81481 -14.48170 -14.16522 -14.11497 -13.66929 -13.35175 -13.01692 -12.91219 -12.85291 -12.62038 -12.36785 -12.11351 -11.63664 -11.58624 -11.38144 -10.69992 -9.85714 -9.60895 -8.32904 -6.44058 0.07995 0.32222 1.26385 1.40165 1.41290 1.53409 1.96527 2.39910 2.80250 3.02580 3.78435 3.82726 4.05234 4.11315 4.32133 4.47943 4.60717 4.66608 4.73051 4.88778 4.98805 5.04098 5.14521 5.31559 5.44959 5.47415 5.49804 5.64265 5.89180 6.00930 6.66438 7.01041 7.25844 8.79292 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051468 B = 0.006478 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.892577 B = 4321.471264 C = 4362.133497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.111 4.111 3 C -0.111 4.111 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.139 4.139 7 C 0.043 3.957 8 O -0.308 6.308 9 C 0.471 3.529 10 O -0.524 6.524 11 C 0.037 3.963 12 C -0.547 4.547 13 H 0.062 0.938 14 C 0.015 3.985 15 N -0.920 5.920 16 Si 0.973 3.027 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.272 1.272 20 H 0.057 0.943 21 H 0.054 0.946 22 H 0.104 0.896 23 H 0.158 0.842 24 H 0.167 0.833 25 H 0.161 0.839 26 H 0.128 0.872 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 13.222 5.489 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.112 4.112 3 C -0.128 4.128 4 C -0.129 4.129 5 C -0.129 4.129 6 C -0.157 4.157 7 C 0.002 3.998 8 O -0.224 6.224 9 C 0.317 3.683 10 O -0.411 6.411 11 C 0.000 4.000 12 C -0.585 4.585 13 H 0.080 0.920 14 C -0.185 4.185 15 N -0.559 5.559 16 Si 0.796 3.204 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.123 0.877 23 H 0.176 0.824 24 H 0.184 0.816 25 H 0.179 0.821 26 H 0.146 0.854 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.426 13.242 5.218 16.053 hybrid contribution -0.350 -0.703 -0.712 1.060 sum 7.076 12.538 4.506 15.086 Atomic orbital electron populations 1.20781 0.90510 1.03981 1.02127 1.20436 0.97439 0.92883 1.00400 1.21335 0.95157 0.96852 0.99497 1.21676 0.93896 0.99438 0.97865 1.21407 1.01576 0.90899 0.99044 1.21483 0.92107 1.00830 1.01272 1.19020 0.91672 0.84286 1.04831 1.84675 1.66123 1.36467 1.35133 1.25186 0.77022 0.86120 0.79962 1.90496 1.55560 1.58453 1.36576 1.18953 0.93804 0.87748 0.99522 1.21287 1.32815 1.12433 0.91931 0.92010 1.25826 0.94965 0.95017 1.02655 1.70037 1.35231 1.16395 1.34249 0.85330 0.78038 0.78422 0.78566 1.19483 1.19628 1.19621 0.92442 0.92667 0.87720 0.82398 0.81556 0.82127 0.85403 0.92759 0.92547 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 9.44 71.23 0.67 -2.94 15 2 C -0.11 -3.61 5.88 -19.77 -0.12 -3.73 15 3 C -0.11 -2.67 9.70 22.26 0.22 -2.45 15 4 C -0.11 -2.28 10.04 22.28 0.22 -2.06 15 5 C -0.11 -2.60 10.04 22.25 0.22 -2.38 15 6 C -0.14 -4.41 9.99 22.37 0.22 -4.18 15 7 C 0.04 1.61 4.93 22.51 0.11 1.72 15 8 O -0.31 -13.40 9.17 4.55 0.04 -13.36 15 9 C 0.47 23.31 7.48 71.23 0.53 23.85 15 10 O -0.52 -28.14 15.21 21.94 0.33 -27.80 15 11 C 0.04 1.98 5.57 29.10 0.16 2.14 15 12 C -0.55 -31.99 8.92 25.60 0.23 -31.76 15 13 H 0.06 3.74 6.76 -2.91 -0.02 3.72 15 14 C 0.02 0.85 5.46 84.66 0.46 1.32 15 15 N -0.92 -53.41 13.29 21.45 0.28 -53.12 15 16 Si 0.97 44.42 29.54 68.60 2.03 46.45 15 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 20 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 21 H 0.05 1.85 7.54 -2.39 -0.02 1.84 15 22 H 0.10 2.34 8.09 -2.39 -0.02 2.33 15 23 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 24 H 0.17 2.01 8.06 -2.91 -0.02 1.98 15 25 H 0.16 2.56 8.06 -2.91 -0.02 2.53 15 26 H 0.13 3.88 8.06 -2.91 -0.02 3.86 15 27 H 0.05 2.95 8.14 -2.39 -0.02 2.93 15 28 H 0.06 3.04 8.14 -2.38 -0.02 3.03 15 29 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -68.22 263.32 6.77 -61.45 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.14 Total: 6.86 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 2.94 Total: -20.48 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.28 Total: -53.12 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: 0.38 Total: -41.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.22 6.77 -61.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.283 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds