Wall clock time and date at job start Mon Mar 30 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.94302 * 2 1 4 4 C 1.38146 * 120.05690 * 179.97438 * 3 2 1 5 5 C 1.38737 * 119.93960 * 359.97438 * 4 3 2 6 6 O 1.35922 * 120.05028 * 179.97438 * 5 4 3 7 7 C 1.34272 * 116.99850 * 68.99481 * 6 5 4 8 8 O 1.20820 * 120.00057 * 5.77741 * 7 6 5 9 9 C 1.50703 * 119.99522 * 185.77081 * 7 6 5 10 10 C 1.50705 * 109.46799 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99623 * 0.02562 * 10 9 7 12 12 C 1.37867 * 119.99944 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00126 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47236 * 90.00092 * 14 12 10 16 16 H 1.48500 * 109.47191 * 210.00538 * 14 12 10 17 17 H 1.48507 * 109.46902 * 330.00259 * 14 12 10 18 18 C 1.38726 * 119.89300 * 0.25144 * 5 4 3 19 19 C 1.38149 * 119.94236 * 359.51568 * 18 5 4 20 20 H 1.09008 * 109.47106 * 89.99920 * 1 2 3 21 21 H 1.08996 * 109.47394 * 209.99623 * 1 2 3 22 22 H 1.08994 * 109.47574 * 330.00108 * 1 2 3 23 23 H 1.08001 * 119.97018 * 359.97438 * 3 2 1 24 24 H 1.07993 * 120.02846 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47397 * 299.99988 * 9 7 6 26 26 H 1.08998 * 109.47263 * 60.00576 * 9 7 6 27 27 H 0.97005 * 119.99914 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.03048 * 179.74616 * 18 5 4 29 29 H 1.08006 * 119.97242 * 180.21030 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 0.0001 0.0016 6 8 5.6326 0.0002 0.0016 7 6 6.2422 0.4300 1.1181 8 8 5.5888 0.6949 2.0993 9 6 7.7412 0.5820 1.1473 10 6 8.1698 1.0746 2.5056 11 1 7.4306 1.2587 3.2711 12 6 9.5055 1.2891 2.7711 13 7 10.4057 1.0644 1.8390 14 14 10.0369 1.8990 4.4550 15 1 10.3028 0.7374 5.3410 16 1 11.2724 2.7117 4.3199 17 1 8.9577 2.7330 5.0426 18 6 3.5787 -1.2007 -0.0031 19 6 2.1972 -1.1980 0.0012 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5138 23 1 1.6557 2.1327 -0.0004 24 1 4.1172 2.1370 0.0001 25 1 8.2082 -0.3824 0.9470 26 1 8.0486 1.2996 0.3866 27 1 11.3455 1.2157 2.0258 28 1 4.1173 -2.1367 -0.0064 29 1 1.6558 -2.1326 0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806377.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:41 Heat of formation + Delta-G solvation = -67.042907 kcal Electronic energy + Delta-G solvation = -13998.667640 eV Core-core repulsion = 11465.718487 eV Total energy + Delta-G solvation = -2532.949153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.61737 -38.51037 -36.13275 -33.11716 -32.05102 -30.90983 -29.31367 -26.57876 -24.13196 -22.78109 -21.71314 -20.08862 -17.58205 -16.38923 -16.14929 -15.95894 -15.37232 -14.58078 -14.26842 -14.05349 -13.75281 -13.39592 -12.76802 -12.48676 -12.27685 -11.88970 -11.62726 -11.41042 -11.18466 -10.90350 -10.75052 -10.32247 -10.10580 -9.50017 -9.42124 -8.87623 -8.55370 -8.27299 -6.17882 -4.20629 1.28675 1.46270 3.12936 3.29025 3.33736 3.36756 3.46699 4.02120 4.39901 4.86363 4.87799 5.04567 5.20207 5.29668 5.43563 5.48338 5.53834 5.74687 5.81274 6.08126 6.28597 6.40966 6.56363 6.61163 6.91678 7.06563 7.14450 7.33715 7.83130 8.01912 8.78405 8.89781 9.44827 10.93852 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.063335 B = 0.005625 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.984663 B = 4976.673261 C = 5159.903905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C -0.105 4.105 4 C -0.125 4.125 5 C 0.096 3.904 6 O -0.311 6.311 7 C 0.459 3.541 8 O -0.497 6.497 9 C 0.035 3.965 10 C -0.522 4.522 11 H 0.077 0.923 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.907 3.093 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.271 1.271 18 C -0.123 4.123 19 C -0.107 4.107 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.265 0.735 28 H 0.130 0.870 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.973 -2.419 -5.318 16.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.102 4.102 3 C -0.123 4.123 4 C -0.143 4.143 5 C 0.055 3.945 6 O -0.228 6.228 7 C 0.304 3.696 8 O -0.381 6.381 9 C -0.002 4.002 10 C -0.560 4.560 11 H 0.095 0.905 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.734 3.266 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.141 4.141 19 C -0.125 4.125 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.145 0.855 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.148 0.852 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.989 -2.335 -5.020 15.979 hybrid contribution 0.413 0.325 0.828 0.980 sum -14.576 -2.010 -4.192 15.300 Atomic orbital electron populations 1.20744 0.91136 1.02687 1.02086 1.19908 0.96105 0.93162 1.00990 1.20849 0.93255 0.97706 1.00493 1.21365 0.94803 0.97706 1.00469 1.18702 0.82435 0.93383 1.00005 1.84785 1.17079 1.78684 1.42272 1.25806 0.93592 0.71366 0.78801 1.90539 1.67183 1.45550 1.34845 1.19159 0.79429 1.00759 1.00809 1.21135 0.92900 1.45232 0.96749 0.90484 1.24994 0.96244 0.95224 0.97812 1.69963 1.01610 1.48490 1.33279 0.86337 0.78015 0.78904 0.83321 1.20404 1.21044 1.19576 1.21119 0.94317 0.97327 1.01368 1.20837 0.93167 0.97665 1.00876 0.91327 0.91639 0.91630 0.85705 0.85540 0.91903 0.91860 0.92535 0.85220 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 15 2 C -0.10 -1.28 5.88 -104.60 -0.62 -1.90 15 3 C -0.10 -1.46 9.69 -39.60 -0.38 -1.84 15 4 C -0.12 -2.12 9.33 -39.43 -0.37 -2.48 15 5 C 0.10 1.79 5.27 -39.22 -0.21 1.59 15 6 O -0.31 -6.53 10.04 -23.63 -0.24 -6.77 15 7 C 0.46 10.95 7.73 36.01 0.28 11.23 15 8 O -0.50 -12.91 14.87 -18.74 -0.28 -13.19 15 9 C 0.04 0.91 5.57 -29.03 -0.16 0.75 15 10 C -0.52 -14.90 8.92 -34.44 -0.31 -15.21 15 11 H 0.08 2.27 6.76 -52.49 -0.35 1.91 15 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 13 N -0.89 -25.82 13.29 55.43 0.74 -25.08 15 14 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 15 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 18 C -0.12 -1.94 9.99 -39.43 -0.39 -2.33 15 19 C -0.11 -1.41 9.69 -39.60 -0.38 -1.79 15 20 H 0.07 0.53 8.14 -51.92 -0.42 0.10 15 21 H 0.06 0.51 8.08 -51.93 -0.42 0.09 15 22 H 0.06 0.53 8.08 -51.93 -0.42 0.11 15 23 H 0.12 1.39 8.06 -52.49 -0.42 0.97 15 24 H 0.13 2.12 8.06 -52.49 -0.42 1.70 15 25 H 0.06 1.63 8.14 -51.93 -0.42 1.20 15 26 H 0.06 1.63 8.14 -51.93 -0.42 1.21 15 27 H 0.27 7.19 8.31 -40.82 -0.34 6.86 15 28 H 0.13 1.85 8.06 -52.49 -0.42 1.43 15 29 H 0.13 1.27 8.06 -52.48 -0.42 0.84 15 LS Contribution 264.49 15.07 3.99 3.99 Total: -1.00 -31.06 264.49 -6.38 -37.44 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.29 Total: -2.03 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.28 Total: -11.04 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.52 Total: -19.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.06 -6.38 -37.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806377.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.599 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds