Wall clock time and date at job start Mon Mar 30 2020 03:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38275 * 119.94302 * 2 1 4 4 C 1.38146 * 120.05690 * 179.97438 * 3 2 1 5 5 C 1.38737 * 119.93960 * 359.97438 * 4 3 2 6 6 O 1.35922 * 120.05028 * 179.97438 * 5 4 3 7 7 C 1.34272 * 116.99850 * 68.99481 * 6 5 4 8 8 O 1.20820 * 120.00057 * 5.77741 * 7 6 5 9 9 C 1.50703 * 119.99522 * 185.77081 * 7 6 5 10 10 C 1.50705 * 109.46799 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99623 * 0.02562 * 10 9 7 12 12 C 1.37867 * 119.99944 * 179.97438 * 10 9 7 13 13 N 1.31516 * 120.00126 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00126 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47236 * 90.00092 * 14 12 10 16 16 H 1.48500 * 109.47191 * 210.00538 * 14 12 10 17 17 H 1.48507 * 109.46902 * 330.00259 * 14 12 10 18 18 C 1.38726 * 119.89300 * 0.25144 * 5 4 3 19 19 C 1.38149 * 119.94236 * 359.51568 * 18 5 4 20 20 H 1.09008 * 109.47106 * 89.99920 * 1 2 3 21 21 H 1.08996 * 109.47394 * 209.99623 * 1 2 3 22 22 H 1.08994 * 109.47574 * 330.00108 * 1 2 3 23 23 H 1.08001 * 119.97018 * 359.97438 * 3 2 1 24 24 H 1.07993 * 120.02846 * 179.97438 * 4 3 2 25 25 H 1.09002 * 109.47397 * 299.99988 * 9 7 6 26 26 H 1.08998 * 109.47263 * 60.00576 * 9 7 6 27 27 H 0.97005 * 119.99914 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.03048 * 179.74616 * 18 5 4 29 29 H 1.08006 * 119.97242 * 180.21030 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 0.0001 0.0016 6 8 5.6326 0.0002 0.0016 7 6 6.2422 0.4300 1.1181 8 8 5.5888 0.6949 2.0993 9 6 7.7412 0.5820 1.1473 10 6 8.1698 1.0746 2.5056 11 1 7.4306 1.2587 3.2711 12 6 9.5055 1.2891 2.7711 13 7 10.4057 1.0644 1.8390 14 14 10.0369 1.8990 4.4550 15 1 10.3028 0.7374 5.3410 16 1 11.2724 2.7117 4.3199 17 1 8.9577 2.7330 5.0426 18 6 3.5787 -1.2007 -0.0031 19 6 2.1972 -1.1980 0.0012 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5137 22 1 -0.3634 0.8899 0.5138 23 1 1.6557 2.1327 -0.0004 24 1 4.1172 2.1370 0.0001 25 1 8.2082 -0.3824 0.9470 26 1 8.0486 1.2996 0.3866 27 1 11.3455 1.2157 2.0258 28 1 4.1173 -2.1367 -0.0064 29 1 1.6558 -2.1326 0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806377.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:41 Heat of formation + Delta-G solvation = -84.123453 kcal Electronic energy + Delta-G solvation = -13999.408308 eV Core-core repulsion = 11465.718487 eV Total energy + Delta-G solvation = -2533.689821 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.23013 -39.84378 -37.84658 -35.26334 -33.16860 -32.05846 -31.34248 -27.77029 -26.03118 -23.97521 -23.18975 -21.58330 -19.27600 -18.40575 -17.89183 -17.62764 -16.63000 -16.35051 -15.80568 -15.42815 -14.66767 -14.51161 -14.45245 -14.17295 -13.78487 -13.22526 -12.99450 -12.85462 -12.67272 -12.56006 -12.42641 -12.12563 -11.72467 -11.59278 -11.35454 -10.70478 -10.03382 -9.48496 -8.33491 -6.44812 0.04255 0.31245 1.24343 1.39836 1.41161 1.53095 1.90449 2.39234 2.75805 3.01977 3.80978 3.85803 3.96496 4.06176 4.36123 4.38227 4.72464 4.75445 4.89378 4.95812 5.00802 5.04072 5.12299 5.28583 5.34355 5.49883 5.55739 5.63878 5.88132 5.98236 6.65692 6.97546 7.25120 8.78689 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.063335 B = 0.005625 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.984663 B = 4976.673261 C = 5159.903905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.108 4.108 4 C -0.144 4.144 5 C 0.043 3.957 6 O -0.308 6.308 7 C 0.469 3.531 8 O -0.523 6.523 9 C 0.037 3.963 10 C -0.549 4.549 11 H 0.062 0.938 12 C 0.015 3.985 13 N -0.921 5.921 14 Si 0.973 3.027 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.272 1.272 18 C -0.131 4.131 19 C -0.104 4.104 20 H 0.088 0.912 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.153 0.847 24 H 0.114 0.886 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.272 0.728 28 H 0.138 0.862 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.035 -2.731 -4.976 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.126 4.126 4 C -0.162 4.162 5 C 0.002 3.998 6 O -0.224 6.224 7 C 0.315 3.685 8 O -0.410 6.410 9 C 0.000 4.000 10 C -0.586 4.586 11 H 0.080 0.920 12 C -0.185 4.185 13 N -0.559 5.559 14 Si 0.797 3.203 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.149 4.149 19 C -0.122 4.122 20 H 0.106 0.894 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.171 0.829 24 H 0.133 0.867 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.059 -2.659 -4.712 17.897 hybrid contribution 0.891 0.383 0.625 1.154 sum -16.168 -2.276 -4.087 16.832 Atomic orbital electron populations 1.20852 0.87787 1.04138 1.03719 1.20468 0.98439 0.92305 0.97799 1.21219 0.91965 0.99803 0.99635 1.21471 0.96429 0.96762 1.01564 1.19159 0.81041 0.95374 1.04256 1.84716 1.19295 1.77884 1.40529 1.25241 0.92976 0.71052 0.79249 1.90500 1.67649 1.46863 1.35947 1.18961 0.81233 1.00091 0.99702 1.21304 0.93292 1.46448 0.97576 0.91974 1.25838 0.95991 0.94950 1.01741 1.70041 1.02115 1.48671 1.35102 0.85320 0.77779 0.78645 0.78546 1.19397 1.19624 1.19656 1.21372 0.95777 0.96582 1.01188 1.21299 0.92013 0.99645 0.99230 0.89387 0.89974 0.90517 0.82930 0.86741 0.92518 0.92501 0.91930 0.84438 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.23 0.71 -0.71 15 2 C -0.09 -1.98 5.88 -19.85 -0.12 -2.10 15 3 C -0.11 -2.81 9.69 22.26 0.22 -2.60 15 4 C -0.14 -4.94 9.33 22.37 0.21 -4.73 15 5 C 0.04 1.61 5.27 22.51 0.12 1.73 15 6 O -0.31 -13.49 10.04 4.48 0.04 -13.44 15 7 C 0.47 23.33 7.73 71.24 0.55 23.88 15 8 O -0.52 -28.16 14.87 21.98 0.33 -27.84 15 9 C 0.04 2.00 5.57 29.10 0.16 2.16 15 10 C -0.55 -32.18 8.92 25.60 0.23 -31.95 15 11 H 0.06 3.77 6.76 -2.91 -0.02 3.75 15 12 C 0.01 0.82 5.46 84.65 0.46 1.29 15 13 N -0.92 -53.56 13.29 21.44 0.28 -53.27 15 14 Si 0.97 44.53 29.54 68.60 2.03 46.55 15 15 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 17 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 18 C -0.13 -4.04 9.99 22.37 0.22 -3.81 15 19 C -0.10 -2.43 9.69 22.25 0.22 -2.22 15 20 H 0.09 0.90 8.14 -2.38 -0.02 0.88 15 21 H 0.08 0.87 8.08 -2.39 -0.02 0.85 15 22 H 0.08 0.89 8.08 -2.39 -0.02 0.87 15 23 H 0.15 3.00 8.06 -2.91 -0.02 2.98 15 24 H 0.11 4.05 8.06 -2.91 -0.02 4.02 15 25 H 0.06 3.07 8.14 -2.39 -0.02 3.05 15 26 H 0.06 3.08 8.14 -2.39 -0.02 3.06 15 27 H 0.27 14.70 8.31 -92.70 -0.77 13.93 15 28 H 0.14 3.86 8.06 -2.91 -0.02 3.84 15 29 H 0.16 2.56 8.06 -2.91 -0.02 2.53 15 Total: -1.00 -67.95 264.49 6.80 -61.14 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.14 Total: 5.91 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 2.98 Total: -19.06 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.28 Total: -53.27 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: 0.37 Total: -41.28 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.95 6.80 -61.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806377.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.980 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds