Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39636 * 120.13555 * 336.29617 * 3 2 1 5 5 C 1.38521 * 119.79501 * 180.29730 * 4 3 2 6 6 N 1.39841 * 119.96829 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00061 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47275 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99447 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00227 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99790 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99986 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47390 * 90.00232 * 12 10 8 14 14 H 1.48503 * 109.47125 * 210.00147 * 12 10 8 15 15 H 1.48503 * 109.47330 * 330.00317 * 12 10 8 16 16 C 1.39055 * 120.06485 * 359.97438 * 5 4 3 17 17 C 1.38143 * 120.27374 * 359.97438 * 16 5 4 18 18 C 1.38280 * 120.20883 * 0.03032 * 17 16 5 19 19 F 1.35100 * 120.04035 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.10384 * 0.25514 * 4 3 2 21 21 H 0.97003 * 120.00279 * 0.02801 * 6 5 4 22 22 H 1.09000 * 109.47416 * 300.00373 * 7 6 5 23 23 H 1.08998 * 109.47456 * 60.00512 * 7 6 5 24 24 H 0.97007 * 120.00106 * 180.02562 * 11 10 8 25 25 H 1.08003 * 119.86237 * 179.97438 * 16 5 4 26 26 H 1.08001 * 119.89769 * 179.97438 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1048 0.4855 5 6 4.6547 -1.0941 0.4879 6 7 5.3609 -2.1990 0.9737 7 6 6.8259 -2.1883 0.9771 8 6 7.3365 -3.4871 1.5458 9 1 6.6394 -4.2449 1.8717 10 6 8.6934 -3.7084 1.6491 11 7 9.5422 -2.7857 1.2518 12 14 9.3263 -5.3186 2.3533 13 1 9.5006 -6.3042 1.2563 14 1 10.6314 -5.0871 3.0228 15 1 8.3498 -5.8448 3.3408 16 6 5.3437 0.0142 0.0076 17 6 4.6524 1.1088 -0.4743 18 6 3.2697 1.1103 -0.4819 19 9 2.5971 2.1829 -0.9534 20 1 2.7339 -1.9651 0.8585 21 1 4.8808 -2.9726 1.3085 22 1 7.1908 -2.0704 -0.0432 23 1 7.1818 -1.3589 1.5883 24 1 10.4969 -2.9415 1.3241 25 1 6.4237 0.0191 0.0114 26 1 5.1937 1.9666 -0.8454 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051636778.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = -12.634803 kcal Electronic energy + Delta-G solvation = -13399.024470 eV Core-core repulsion = 10777.267075 eV Total energy + Delta-G solvation = -2621.757395 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.80549 -40.40333 -37.84627 -36.43387 -34.51335 -32.42983 -30.71867 -27.95124 -25.59039 -23.95515 -23.14697 -19.92925 -18.83004 -18.24671 -17.54313 -16.78827 -16.64333 -16.51944 -15.25074 -15.04691 -15.00094 -14.70424 -14.48716 -14.28550 -14.05414 -13.70247 -13.44502 -13.17796 -12.72505 -12.66996 -12.22338 -11.99976 -11.38272 -11.00856 -10.49505 -10.08045 -8.26495 -8.19369 -6.37926 -0.30112 0.41325 1.45366 1.46326 1.48256 1.56379 1.90518 2.36457 2.60463 2.81552 2.95705 3.10408 3.29719 3.85273 4.17280 4.31917 4.54495 4.80693 5.04258 5.12571 5.22460 5.32655 5.39230 5.55596 5.75808 5.94897 6.30798 6.43836 6.75240 7.12292 7.34491 8.84544 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.056839 B = 0.005493 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.505093 B = 5095.989242 C = 5573.347544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.280 3.720 3 C -0.017 4.017 4 C -0.126 4.126 5 C 0.209 3.791 6 N -0.726 5.726 7 C 0.265 3.735 8 C -0.556 4.556 9 H 0.071 0.929 10 C 0.013 3.987 11 N -0.923 5.923 12 Si 0.968 3.032 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.264 1.264 16 C -0.151 4.151 17 C -0.085 4.085 18 C 0.061 3.939 19 F -0.145 7.145 20 H 0.154 0.846 21 H 0.402 0.598 22 H 0.004 0.996 23 H 0.004 0.996 24 H 0.268 0.732 25 H 0.132 0.868 26 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 4.246 -1.902 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.034 4.034 3 C -0.022 4.022 4 C -0.152 4.152 5 C 0.101 3.899 6 N -0.350 5.350 7 C 0.142 3.858 8 C -0.594 4.594 9 H 0.089 0.911 10 C -0.187 4.187 11 N -0.561 5.561 12 Si 0.793 3.207 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.188 1.188 16 C -0.174 4.174 17 C -0.104 4.104 18 C 0.037 3.963 19 F -0.124 7.124 20 H 0.172 0.828 21 H 0.238 0.762 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.206 4.306 -1.921 9.464 hybrid contribution 0.790 -0.781 0.329 1.158 sum -7.416 3.525 -1.592 8.364 Atomic orbital electron populations 1.81203 1.12733 1.08620 1.09909 1.25545 0.92473 0.92722 0.92708 1.15597 0.83617 0.96157 1.06870 1.20433 0.91437 0.98535 1.04785 1.17996 0.90818 0.88579 0.92485 1.45250 1.06775 1.16486 1.66521 1.18717 0.75543 0.96311 0.95187 1.21594 0.92539 1.02376 1.42885 0.91125 1.25763 0.97003 1.00456 0.95466 1.70035 1.03021 1.35534 1.47558 0.85395 0.77700 0.79012 0.78590 1.20000 1.20990 1.18842 1.20924 1.00908 0.92827 1.02785 1.20929 0.90739 0.99723 0.99058 1.17326 0.90206 0.84194 1.04607 1.91466 1.80633 1.53660 1.86599 0.82810 0.76227 0.97832 0.97817 0.92308 0.84970 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.01 18.54 19.00 0.35 -13.66 15 2 C 0.28 7.84 14.97 88.33 1.32 9.16 15 3 C -0.02 -0.45 5.74 -21.30 -0.12 -0.57 15 4 C -0.13 -3.20 9.60 22.67 0.22 -2.98 15 5 C 0.21 6.28 6.65 38.13 0.25 6.53 15 6 N -0.73 -25.51 5.73 -343.19 -1.97 -27.48 15 7 C 0.27 11.97 4.66 85.63 0.40 12.37 15 8 C -0.56 -27.53 9.28 25.60 0.24 -27.29 15 9 H 0.07 3.31 7.60 -2.91 -0.02 3.29 15 10 C 0.01 0.69 5.46 84.66 0.46 1.15 15 11 N -0.92 -50.18 13.29 21.45 0.28 -49.90 15 12 Si 0.97 40.08 29.54 68.60 2.03 42.11 15 13 H -0.27 -11.12 7.11 99.48 0.71 -10.42 15 14 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 15 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 16 C -0.15 -4.31 9.30 22.44 0.21 -4.10 15 17 C -0.09 -2.02 10.00 22.26 0.22 -1.80 15 18 C 0.06 1.55 7.27 22.67 0.16 1.71 15 19 F -0.14 -3.84 16.80 44.97 0.76 -3.09 15 20 H 0.15 3.28 8.06 -2.91 -0.02 3.25 15 21 H 0.40 12.87 8.33 -92.71 -0.77 12.10 15 22 H 0.00 0.19 7.94 -2.39 -0.02 0.17 15 23 H 0.00 0.20 7.95 -2.39 -0.02 0.18 15 24 H 0.27 13.79 8.31 -92.70 -0.77 13.02 15 25 H 0.13 4.12 6.71 -2.91 -0.02 4.10 15 26 H 0.17 3.02 8.06 -2.91 -0.02 3.00 15 Total: -1.00 -55.18 251.10 5.27 -49.91 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.45 Total: 7.91 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 3.37 Total: -5.82 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -1.33 Total: -91.03 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.09 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -55.18 5.27 -49.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051636778.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.279 kcal (2) G-P(sol) polarization free energy of solvation -55.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds