Wall clock time and date at job start Mon Mar 30 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38390 * 119.92515 * 2 1 4 4 C 1.38348 * 120.30645 * 180.02562 * 3 2 1 5 5 C 1.37970 * 120.14749 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.07628 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47076 * 102.88654 * 6 5 4 8 8 H 1.07999 * 119.99971 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00060 * 180.02562 * 7 6 5 10 10 N 1.31504 * 119.99902 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99682 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47000 * 90.00438 * 11 9 7 13 13 H 1.48502 * 109.46716 * 210.00128 * 11 9 7 14 14 H 1.48497 * 109.47279 * 330.00032 * 11 9 7 15 15 C 1.39614 * 119.84560 * 0.02562 * 5 4 3 16 16 C 1.47723 * 120.14868 * 180.02562 * 15 5 4 17 17 O 1.21479 * 119.99871 * 5.91284 * 16 15 5 18 18 O 1.34706 * 120.00263 * 186.18392 * 16 15 5 19 19 C 1.37918 * 119.92778 * 180.28434 * 2 1 3 20 20 H 1.09000 * 109.47559 * 89.99699 * 1 2 3 21 21 H 1.08995 * 109.47298 * 210.00177 * 1 2 3 22 22 H 1.09006 * 109.46883 * 329.99366 * 1 2 3 23 23 H 1.08002 * 119.85135 * 359.97438 * 3 2 1 24 24 H 1.07996 * 119.92780 * 179.97438 * 4 3 2 25 25 H 1.09003 * 109.47049 * 222.88790 * 6 5 4 26 26 H 1.08994 * 109.47243 * 342.88453 * 6 5 4 27 27 H 0.97002 * 120.00010 * 180.02562 * 10 9 7 28 28 H 0.96704 * 117.00249 * 180.02562 * 18 16 15 29 29 H 1.08009 * 120.07358 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5808 1.2086 -0.0005 5 6 4.2816 0.0202 -0.0016 6 6 5.7886 0.0321 -0.0028 7 6 6.2945 -0.2814 1.3817 8 1 5.5947 -0.4700 2.1825 9 6 7.6506 -0.3265 1.6264 10 7 8.0920 -0.5996 2.8347 11 14 8.8609 0.0003 0.2415 12 1 9.1706 1.4516 0.1871 13 1 10.1106 -0.7637 0.4857 14 1 8.2635 -0.4271 -1.0491 15 6 3.5915 -1.1935 -0.0027 16 6 4.3351 -2.4699 -0.0033 17 8 5.5450 -2.4679 0.1056 18 8 3.6722 -3.6356 -0.1300 19 6 2.1951 -1.1953 -0.0059 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5140 23 1 1.6537 2.1326 -0.0004 24 1 4.1134 2.1481 -0.0009 25 1 6.1573 -0.7177 -0.7028 26 1 6.1439 1.0171 -0.3050 27 1 9.0461 -0.6310 3.0069 28 1 4.2018 -4.4447 -0.1245 29 1 1.6550 -2.1306 -0.0102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057936623.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:18 Heat of formation + Delta-G solvation = -94.815421 kcal Electronic energy + Delta-G solvation = -14597.894228 eV Core-core repulsion = 12063.740769 eV Total energy + Delta-G solvation = -2534.153460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.39764 -39.66860 -37.05411 -35.46332 -33.97060 -32.24684 -30.89525 -27.24002 -25.63802 -23.90134 -22.90183 -20.97248 -18.99402 -18.81728 -17.66934 -16.76602 -16.53206 -16.21701 -15.92963 -15.10508 -14.74065 -14.49476 -14.19344 -13.91744 -13.67796 -13.17065 -12.92771 -12.71729 -12.48396 -12.31416 -12.29732 -11.89836 -11.75160 -11.53460 -10.93683 -10.68649 -9.90359 -9.32723 -8.23921 -6.21584 -0.11052 0.49952 1.30842 1.35562 1.47519 1.75779 2.24547 2.38938 2.89140 3.13551 3.90305 3.99475 4.16370 4.28339 4.40496 4.68731 4.77294 4.93438 4.97010 5.00393 5.11362 5.18300 5.34531 5.42331 5.60230 5.63564 5.76538 5.85822 6.05476 6.27431 6.75318 7.19688 7.37250 8.93998 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.032811 B = 0.009780 C = 0.008350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.161555 B = 2862.425116 C = 3352.558456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.119 4.119 3 C -0.076 4.076 4 C -0.144 4.144 5 C -0.019 4.019 6 C 0.016 3.984 7 C -0.472 4.472 8 H 0.019 0.981 9 C 0.007 3.993 10 N -0.957 5.957 11 Si 0.946 3.054 12 H -0.258 1.258 13 H -0.287 1.287 14 H -0.258 1.258 15 C -0.149 4.149 16 C 0.502 3.498 17 O -0.507 6.507 18 O -0.511 6.511 19 C -0.065 4.065 20 H 0.084 0.916 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.162 0.838 24 H 0.137 0.863 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.263 0.737 28 H 0.424 0.576 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 0.641 -9.147 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.162 4.162 5 C -0.019 4.019 6 C -0.021 4.021 7 C -0.510 4.510 8 H 0.037 0.963 9 C -0.188 4.188 10 N -0.600 5.600 11 Si 0.770 3.230 12 H -0.183 1.183 13 H -0.213 1.213 14 H -0.183 1.183 15 C -0.150 4.150 16 C 0.346 3.654 17 O -0.395 6.395 18 O -0.326 6.326 19 C -0.083 4.083 20 H 0.103 0.897 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.179 0.821 24 H 0.155 0.845 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.072 0.928 28 H 0.284 0.716 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.200 0.973 -9.029 17.706 hybrid contribution 1.657 -0.784 0.059 1.834 sum -13.543 0.189 -8.970 16.245 Atomic orbital electron populations 1.20787 0.87741 1.03942 1.03511 1.20250 0.98287 0.91978 1.01358 1.21627 0.92967 0.99312 0.95440 1.21233 0.95248 0.97037 1.02659 1.20329 0.96588 0.92737 0.92236 1.18817 0.89602 0.96899 0.96734 1.20738 0.91592 1.45463 0.93233 0.96273 1.25777 1.00277 0.94911 0.97832 1.70047 1.14570 1.52577 1.22772 0.85727 0.77959 0.78960 0.80361 1.18315 1.21278 1.18259 1.19064 0.94554 0.89672 1.11735 1.21268 0.85742 0.85078 0.73341 1.91060 1.16463 1.87676 1.44349 1.84463 1.45387 1.17037 1.85670 1.21469 0.91123 0.99906 0.95844 0.89712 0.90806 0.89989 0.82066 0.84549 0.94656 0.95451 0.92825 0.71553 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.01 71.24 0.71 -0.92 15 2 C -0.12 -2.99 5.87 -19.90 -0.12 -3.11 15 3 C -0.08 -1.99 9.69 22.33 0.22 -1.78 15 4 C -0.14 -4.99 9.66 22.23 0.21 -4.77 15 5 C -0.02 -0.80 5.12 -19.60 -0.10 -0.90 15 6 C 0.02 0.84 3.48 29.10 0.10 0.94 15 7 C -0.47 -29.13 7.83 25.60 0.20 -28.93 15 8 H 0.02 1.31 7.98 -2.91 -0.02 1.29 15 9 C 0.01 0.45 5.47 84.66 0.46 0.91 15 10 N -0.96 -63.68 13.96 21.45 0.30 -63.38 15 11 Si 0.95 48.06 27.47 68.60 1.88 49.95 15 12 H -0.26 -12.15 7.11 99.48 0.71 -11.44 15 13 H -0.29 -14.35 7.11 99.48 0.71 -13.64 15 14 H -0.26 -12.71 6.54 99.48 0.65 -12.06 15 15 C -0.15 -5.98 5.85 -20.10 -0.12 -6.10 15 16 C 0.50 21.10 8.18 70.33 0.58 21.68 15 17 O -0.51 -26.30 12.92 19.91 0.26 -26.05 15 18 O -0.51 -15.74 12.70 -56.16 -0.71 -16.45 15 19 C -0.07 -1.99 9.26 22.53 0.21 -1.79 15 20 H 0.08 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.07 1.06 8.08 -2.39 -0.02 1.04 15 22 H 0.08 1.04 8.08 -2.38 -0.02 1.03 15 23 H 0.16 2.90 8.06 -2.91 -0.02 2.88 15 24 H 0.14 4.34 8.01 -2.91 -0.02 4.32 15 25 H 0.04 1.92 5.39 -2.39 -0.01 1.91 15 26 H 0.03 1.32 7.40 -2.39 -0.02 1.31 15 27 H 0.26 16.34 8.31 -92.71 -0.77 15.57 15 28 H 0.42 9.28 9.11 -74.05 -0.67 8.61 15 29 H 0.15 3.81 7.63 -2.91 -0.02 3.79 15 Total: -1.00 -79.56 254.42 4.52 -75.04 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.44 Total: 5.65 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 2.36 Total: -24.76 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.30 Total: -63.38 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.46 Total: -42.50 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.95 kcal Total: -79.56 4.52 -75.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057936623.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.776 kcal (2) G-P(sol) polarization free energy of solvation -79.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds