Wall clock time and date at job start Mon Mar 30 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99828 * 2 1 4 4 H 1.48504 * 109.47469 * 270.00534 * 3 2 1 5 5 H 1.48502 * 109.47368 * 30.00182 * 3 2 1 6 6 H 1.48499 * 109.47383 * 150.00215 * 3 2 1 7 7 C 1.37872 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99976 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.64869 * 298.28927 * 9 7 2 11 11 C 1.54454 * 110.72476 * 174.93562 * 9 7 2 12 12 O 1.43898 * 105.07908 * 219.84954 * 11 9 7 13 13 C 1.43791 * 107.10206 * 358.28943 * 12 11 9 14 14 H 1.08999 * 110.16612 * 265.87986 * 13 12 11 15 15 C 1.50703 * 110.10722 * 144.26550 * 13 12 11 16 16 C 1.38234 * 120.00257 * 63.26062 * 15 13 12 17 17 C 1.38238 * 119.99675 * 180.27927 * 16 15 13 18 18 C 1.38229 * 120.00124 * 359.45911 * 17 16 15 19 19 C 1.38234 * 119.99957 * 0.56005 * 18 17 16 20 20 C 1.38234 * 119.99503 * 243.27662 * 15 13 12 21 21 O 1.44381 * 106.17187 * 25.08539 * 13 12 11 22 22 H 0.96994 * 120.00346 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.32398 * 338.75102 * 11 9 7 24 24 H 1.08998 * 110.32234 * 100.85174 * 11 9 7 25 25 H 1.08002 * 119.99744 * 359.97438 * 16 15 13 26 26 H 1.08004 * 119.99577 * 179.72816 * 17 16 15 27 27 H 1.07999 * 119.99961 * 180.28392 * 18 17 16 28 28 H 1.08001 * 120.00274 * 179.72697 * 19 18 17 29 29 H 1.07997 * 120.00460 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6406 -2.5906 0.8979 11 6 2.2239 -3.6919 -0.1287 12 8 1.5668 -4.6176 -1.0131 13 6 0.2907 -4.0470 -1.3502 14 1 -0.4792 -4.4245 -0.6772 15 6 -0.0629 -4.3758 -2.7778 16 6 -0.2485 -5.6916 -3.1585 17 6 -0.5672 -5.9934 -4.4693 18 6 -0.7113 -4.9787 -5.3968 19 6 -0.5253 -3.6629 -5.0162 20 6 -0.2013 -3.3613 -3.7066 21 8 0.4337 -2.6193 -1.1901 22 1 -0.4850 0.8400 0.0004 23 1 3.1702 -3.3641 -0.5590 24 1 2.3907 -4.1508 0.8458 25 1 -0.1396 -6.4841 -2.4329 26 1 -0.7079 -7.0218 -4.7677 27 1 -0.9648 -5.2142 -6.4199 28 1 -0.6335 -2.8703 -5.7418 29 1 -0.0557 -2.3334 -3.4093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058520800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:30 Heat of formation + Delta-G solvation = -65.916401 kcal Electronic energy + Delta-G solvation = -14631.331629 eV Core-core repulsion = 12098.431325 eV Total energy + Delta-G solvation = -2532.900304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50066 -38.15057 -33.92584 -32.74009 -31.36976 -30.49167 -28.70012 -25.10669 -24.03058 -22.27259 -21.05294 -20.53686 -17.26027 -16.39781 -15.97813 -15.23406 -14.99476 -14.49902 -14.44118 -13.72320 -13.62528 -13.00279 -12.57408 -12.42545 -12.30280 -11.65719 -11.28449 -10.98145 -10.91186 -10.66921 -10.52225 -10.11276 -9.48276 -9.01105 -8.76924 -8.56015 -8.46787 -8.39788 -6.16673 -4.31647 1.65836 1.77813 3.24555 3.31134 3.33598 4.08750 4.30708 4.65920 4.78661 5.22593 5.23684 5.33899 5.48397 5.73702 5.85433 5.96246 6.02239 6.12624 6.18642 6.29154 6.41739 6.46852 6.75817 6.84705 7.02126 7.07382 7.24875 7.36430 7.72944 8.01956 8.27145 8.76321 9.40208 10.91215 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.008216 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.053866 B = 3407.356759 C = 3869.810571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.069 0.931 9 C 0.180 3.820 10 H 0.041 0.959 11 C 0.025 3.975 12 O -0.399 6.399 13 C 0.255 3.745 14 H 0.065 0.935 15 C -0.081 4.081 16 C -0.101 4.101 17 C -0.133 4.133 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.080 4.080 21 O -0.348 6.348 22 H 0.264 0.736 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 -7.734 -5.801 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.128 4.128 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.125 3.875 10 H 0.058 0.942 11 C -0.051 4.051 12 O -0.321 6.321 13 C 0.159 3.841 14 H 0.082 0.918 15 C -0.082 4.082 16 C -0.119 4.119 17 C -0.151 4.151 18 C -0.142 4.142 19 C -0.148 4.148 20 C -0.098 4.098 21 O -0.268 6.268 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.324 -7.638 -5.996 9.800 hybrid contribution 0.372 0.872 0.169 0.963 sum -0.952 -6.766 -5.827 8.980 Atomic orbital electron populations 1.70027 1.06117 1.27078 1.46455 1.25079 0.94858 0.99579 0.93287 0.86499 0.79864 0.82683 0.78413 1.20293 1.20968 1.19569 1.20900 0.92837 0.89177 1.54373 0.91241 1.21352 0.87024 0.93680 0.85432 0.94167 1.24143 0.98092 0.90477 0.92419 1.88756 1.31424 1.44886 1.67078 1.22691 0.86679 0.83564 0.91148 0.91786 1.19886 0.99716 0.93559 0.95021 1.20907 0.98944 0.95764 0.96271 1.20996 1.01855 0.98870 0.93403 1.21094 1.00867 0.93169 0.99089 1.21166 1.00999 0.96384 0.96279 1.21254 0.95749 1.00734 0.92029 1.89762 1.72096 1.16670 1.48251 0.92589 0.90876 0.91946 0.86171 0.86415 0.86590 0.86243 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 12.95 55.43 0.72 -24.19 15 2 C 0.08 2.17 5.42 -17.82 -0.10 2.08 15 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.54 -14.71 8.80 -34.44 -0.30 -15.01 15 8 H 0.07 1.83 7.59 -52.49 -0.40 1.44 15 9 C 0.18 4.64 3.25 -27.12 -0.09 4.56 15 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 15 11 C 0.03 0.55 7.65 37.92 0.29 0.84 15 12 O -0.40 -8.85 11.20 -59.28 -0.66 -9.51 15 13 C 0.26 5.62 4.18 36.01 0.15 5.77 15 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 15 C -0.08 -1.61 5.57 -104.62 -0.58 -2.19 15 16 C -0.10 -1.68 9.68 -39.58 -0.38 -2.06 15 17 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 15 18 C -0.12 -1.75 10.05 -39.59 -0.40 -2.14 15 19 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 15 20 C -0.08 -1.54 9.40 -39.58 -0.37 -1.91 15 21 O -0.35 -9.08 9.30 -59.28 -0.55 -9.63 15 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 23 H 0.07 1.60 7.69 -51.93 -0.40 1.20 15 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 25 H 0.12 1.81 8.06 -52.49 -0.42 1.38 15 26 H 0.12 1.32 8.06 -52.48 -0.42 0.90 15 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 29 H 0.14 2.99 7.03 -52.49 -0.37 2.62 15 LS Contribution 255.66 15.07 3.85 3.85 Total: -1.00 -30.02 255.66 -7.50 -37.53 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.26 Total: 0.96 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.58 Total: -14.84 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.72 Total: -24.19 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.22 Total: -19.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.02 -7.50 -37.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058520800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.390 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds