Wall clock time and date at job start Mon Mar 30 2020 03:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99828 * 2 1 4 4 H 1.48504 * 109.47469 * 270.00534 * 3 2 1 5 5 H 1.48502 * 109.47368 * 30.00182 * 3 2 1 6 6 H 1.48499 * 109.47383 * 150.00215 * 3 2 1 7 7 C 1.37872 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99976 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.64869 * 298.28927 * 9 7 2 11 11 C 1.54454 * 110.72476 * 174.93562 * 9 7 2 12 12 O 1.43898 * 105.07908 * 219.84954 * 11 9 7 13 13 C 1.43791 * 107.10206 * 358.28943 * 12 11 9 14 14 H 1.08999 * 110.16612 * 265.87986 * 13 12 11 15 15 C 1.50703 * 110.10722 * 144.26550 * 13 12 11 16 16 C 1.38234 * 120.00257 * 63.26062 * 15 13 12 17 17 C 1.38238 * 119.99675 * 180.27927 * 16 15 13 18 18 C 1.38229 * 120.00124 * 359.45911 * 17 16 15 19 19 C 1.38234 * 119.99957 * 0.56005 * 18 17 16 20 20 C 1.38234 * 119.99503 * 243.27662 * 15 13 12 21 21 O 1.44381 * 106.17187 * 25.08539 * 13 12 11 22 22 H 0.96994 * 120.00346 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.32398 * 338.75102 * 11 9 7 24 24 H 1.08998 * 110.32234 * 100.85174 * 11 9 7 25 25 H 1.08002 * 119.99744 * 359.97438 * 16 15 13 26 26 H 1.08004 * 119.99577 * 179.72816 * 17 16 15 27 27 H 1.07999 * 119.99961 * 180.28392 * 18 17 16 28 28 H 1.08001 * 120.00274 * 179.72697 * 19 18 17 29 29 H 1.07997 * 120.00460 * 0.02562 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6406 -2.5906 0.8979 11 6 2.2239 -3.6919 -0.1287 12 8 1.5668 -4.6176 -1.0131 13 6 0.2907 -4.0470 -1.3502 14 1 -0.4792 -4.4245 -0.6772 15 6 -0.0629 -4.3758 -2.7778 16 6 -0.2485 -5.6916 -3.1585 17 6 -0.5672 -5.9934 -4.4693 18 6 -0.7113 -4.9787 -5.3968 19 6 -0.5253 -3.6629 -5.0162 20 6 -0.2013 -3.3613 -3.7066 21 8 0.4337 -2.6193 -1.1901 22 1 -0.4850 0.8400 0.0004 23 1 3.1702 -3.3641 -0.5590 24 1 2.3907 -4.1508 0.8458 25 1 -0.1396 -6.4841 -2.4329 26 1 -0.7079 -7.0218 -4.7677 27 1 -0.9648 -5.2142 -6.4199 28 1 -0.6335 -2.8703 -5.7418 29 1 -0.0557 -2.3334 -3.4093 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058520800.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:30 Heat of formation + Delta-G solvation = -84.414197 kcal Electronic energy + Delta-G solvation = -14632.133754 eV Core-core repulsion = 12098.431325 eV Total energy + Delta-G solvation = -2533.702429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.18375 -39.57780 -35.83479 -34.72724 -32.90257 -31.76245 -30.51868 -27.01904 -25.71221 -23.69129 -22.78140 -22.02571 -19.16867 -17.98670 -17.73198 -16.86772 -16.67902 -16.28773 -16.07075 -15.26168 -15.19202 -14.44087 -14.19943 -14.08200 -13.86008 -13.37662 -13.13686 -12.81345 -12.48813 -12.28978 -12.01133 -11.90550 -11.39846 -10.93448 -10.68644 -10.44033 -9.81771 -9.74006 -8.26541 -6.49483 0.36702 0.50640 1.40119 1.41715 1.52709 2.35155 2.69762 2.91712 3.05686 3.39434 4.00278 4.07560 4.14573 4.20593 4.22783 4.33542 4.41044 4.61040 4.67676 4.76651 5.03225 5.12752 5.17131 5.22080 5.55822 5.59998 5.61963 5.72183 5.97245 6.11219 6.36392 6.68284 7.27038 8.82472 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.008216 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.053866 B = 3407.356759 C = 3869.810571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.170 3.830 10 H 0.018 0.982 11 C 0.034 3.966 12 O -0.400 6.400 13 C 0.252 3.748 14 H 0.068 0.932 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.131 4.131 20 C -0.110 4.110 21 O -0.376 6.376 22 H 0.266 0.734 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.133 0.867 26 H 0.160 0.840 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -8.950 -7.469 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.594 4.594 8 H 0.093 0.907 9 C 0.114 3.886 10 H 0.036 0.964 11 C -0.042 4.042 12 O -0.322 6.322 13 C 0.156 3.844 14 H 0.085 0.915 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.139 4.139 18 C -0.129 4.129 19 C -0.149 4.149 20 C -0.129 4.129 21 O -0.296 6.296 22 H 0.075 0.925 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.151 0.849 26 H 0.177 0.823 27 H 0.177 0.823 28 H 0.158 0.842 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.910 -8.870 -7.659 11.754 hybrid contribution 0.192 1.148 0.629 1.323 sum -0.718 -7.723 -7.030 10.468 Atomic orbital electron populations 1.70161 1.07847 1.28042 1.47626 1.25997 0.95690 1.03407 0.92658 0.85379 0.78888 0.77878 0.78440 1.20126 1.20333 1.18153 1.21304 0.93383 0.90340 1.54391 0.90666 1.21318 0.87564 0.94937 0.84748 0.96403 1.24069 0.96979 0.89323 0.93857 1.88726 1.31612 1.44702 1.67192 1.22884 0.86523 0.81589 0.93390 0.91477 1.19850 1.02451 0.95315 0.93625 1.21122 0.98848 0.94430 0.98058 1.21488 0.99361 1.01083 0.91997 1.21589 0.98441 0.91845 1.01071 1.21421 1.00114 0.98440 0.94887 1.21087 0.98707 0.98945 0.94116 1.89713 1.72433 1.19476 1.48017 0.92512 0.90754 0.89090 0.84869 0.82261 0.82290 0.84152 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.90 12.95 21.45 0.28 -53.63 15 2 C 0.03 1.44 5.42 84.65 0.46 1.90 15 3 Si 0.97 43.36 29.54 68.60 2.03 45.38 15 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 7 C -0.56 -31.37 8.80 25.60 0.23 -31.15 15 8 H 0.08 4.02 7.59 -2.91 -0.02 3.99 15 9 C 0.17 9.08 3.25 30.34 0.10 9.18 15 10 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 11 C 0.03 1.51 7.65 72.48 0.55 2.07 15 12 O -0.40 -17.86 11.20 -125.98 -1.41 -19.27 15 13 C 0.25 11.45 4.18 71.24 0.30 11.75 15 14 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 15 C -0.11 -4.48 5.57 -19.87 -0.11 -4.59 15 16 C -0.11 -3.35 9.68 22.27 0.22 -3.14 15 17 C -0.12 -2.98 10.05 22.27 0.22 -2.75 15 18 C -0.11 -2.68 10.05 22.27 0.22 -2.46 15 19 C -0.13 -3.95 10.05 22.27 0.22 -3.72 15 20 C -0.11 -4.39 9.40 22.27 0.21 -4.18 15 21 O -0.38 -20.65 9.30 -125.98 -1.17 -21.82 15 22 H 0.27 14.94 8.31 -92.71 -0.77 14.17 15 23 H 0.07 3.26 7.69 -2.39 -0.02 3.24 15 24 H 0.09 3.48 8.14 -2.39 -0.02 3.46 15 25 H 0.13 3.74 8.06 -2.91 -0.02 3.72 15 26 H 0.16 2.62 8.06 -2.91 -0.02 2.59 15 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 15 28 H 0.14 3.52 8.06 -2.91 -0.02 3.50 15 29 H 0.10 4.68 7.03 -2.91 -0.02 4.66 15 Total: -1.00 -67.10 255.66 3.48 -63.62 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.14 Total: 12.81 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.62 Total: -27.09 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.28 Total: -53.63 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.58 Total: -41.10 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.10 3.48 -63.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058520800.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.795 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds