Wall clock time and date at job start Mon Mar 30 2020 03:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48507 * 109.47334 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46913 * 119.99539 * 3 2 1 6 6 H 1.48493 * 109.47308 * 239.99572 * 3 2 1 7 7 C 1.39936 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00328 * 154.60592 * 7 2 1 9 9 C 1.41401 * 120.00319 * 334.60655 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.58663 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.53000 * 109.47378 * 265.31121 * 15 14 13 17 17 C 1.50696 * 109.47064 * 180.02562 * 16 15 14 18 18 O 1.20827 * 120.00235 * 359.97438 * 17 16 15 19 19 O 1.34231 * 120.00025 * 179.97438 * 17 16 15 20 20 H 0.97004 * 119.99533 * 174.17363 * 1 2 3 21 21 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 23 23 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 24 24 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 25 25 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 26 26 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 27 27 H 1.09001 * 109.46727 * 299.99768 * 16 15 14 28 28 H 1.09003 * 109.46942 * 59.99554 * 16 15 14 29 29 H 0.96695 * 117.00519 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0958 1.6965 1.2126 6 1 3.0959 1.6965 -1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0097 -1.2572 -0.4005 9 6 1.4036 -2.3771 0.5262 10 6 0.3892 -2.2734 1.4962 11 6 -0.1916 -3.4140 2.0011 12 6 0.2193 -4.6620 1.5582 13 6 1.2182 -4.7761 0.6039 14 6 1.8089 -3.6484 0.0804 15 6 2.8897 -3.7753 -0.9622 16 6 4.2602 -3.7408 -0.2830 17 6 5.3409 -3.8670 -1.3256 18 8 5.0453 -3.9741 -2.4923 19 8 6.6319 -3.8604 -0.9583 20 1 -0.4850 -0.8358 -0.0853 21 1 0.0684 -1.3024 1.8436 22 1 -0.9705 -3.3369 2.7453 23 1 -0.2417 -5.5520 1.9603 24 1 1.5308 -5.7532 0.2664 25 1 2.7718 -4.7191 -1.4947 26 1 2.8128 -2.9481 -1.6677 27 1 4.3780 -2.7970 0.2495 28 1 4.3369 -4.5681 0.4225 29 1 7.2892 -3.9444 -1.6625 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060144985.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:45 Heat of formation + Delta-G solvation = -116.467442 kcal Electronic energy + Delta-G solvation = -14412.309108 eV Core-core repulsion = 11877.216746 eV Total energy + Delta-G solvation = -2535.092362 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.25831 -39.75955 -37.14426 -35.74668 -34.85498 -31.13465 -30.67703 -27.19883 -25.81553 -22.81200 -22.39183 -21.22060 -19.61998 -19.01696 -17.51142 -17.23394 -16.66725 -16.15711 -15.85894 -15.41110 -14.50566 -14.11925 -14.09911 -13.80994 -13.75756 -13.16364 -12.83814 -12.54169 -12.43818 -12.28080 -12.02188 -11.94909 -11.65294 -11.37031 -11.14516 -10.82090 -9.45173 -9.43001 -9.04850 -6.39132 0.91430 0.98334 1.22136 1.51101 1.65141 1.78121 2.20852 2.34579 2.72073 3.56225 4.07571 4.12959 4.29762 4.42272 4.50121 4.68144 4.75402 4.81495 5.05001 5.12970 5.24579 5.33341 5.51983 5.62175 5.81864 5.87433 6.01855 6.08147 6.31698 6.46378 6.86142 7.01960 7.03614 8.09370 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.011855 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.809626 B = 2361.253606 C = 3586.743002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.002 3.998 3 Si 1.108 2.892 4 H -0.275 1.275 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.076 3.924 10 C -0.241 4.241 11 C -0.096 4.096 12 C -0.247 4.247 13 C -0.081 4.081 14 C -0.207 4.207 15 C -0.031 4.031 16 C -0.102 4.102 17 C 0.490 3.510 18 O -0.553 6.553 19 O -0.510 6.510 20 H 0.283 0.717 21 H 0.084 0.916 22 H 0.109 0.891 23 H 0.120 0.880 24 H 0.122 0.878 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 -4.342 0.655 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.214 4.214 3 Si 0.926 3.074 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.186 1.186 7 C -0.573 4.573 8 H 0.096 0.904 9 C 0.073 3.927 10 C -0.260 4.260 11 C -0.114 4.114 12 C -0.266 4.266 13 C -0.099 4.099 14 C -0.209 4.209 15 C -0.069 4.069 16 C -0.140 4.140 17 C 0.334 3.666 18 O -0.444 6.444 19 O -0.324 6.324 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.127 0.873 23 H 0.138 0.862 24 H 0.140 0.860 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 7.998 -2.701 0.705 8.471 hybrid contribution 0.146 -1.638 -0.530 1.728 sum 8.144 -4.338 0.175 9.229 Atomic orbital electron populations 1.70564 1.09097 1.33171 1.31804 1.28281 0.95685 1.07423 0.89973 0.83119 0.74914 0.70323 0.79064 1.19957 1.18499 1.18567 1.20693 1.03482 0.94819 1.38328 0.90400 1.17841 0.91308 0.93214 0.90289 1.21158 1.04896 0.97045 1.02934 1.20920 0.98555 0.93122 0.98784 1.20750 1.04063 0.96404 1.05360 1.20850 0.95820 0.97156 0.96075 1.19830 1.04523 0.92904 1.03596 1.19833 0.90504 1.01229 0.95327 1.21375 0.89823 1.06296 0.96467 1.23696 0.83474 0.70315 0.89081 1.90686 1.84008 1.47572 1.22118 1.84524 1.17036 1.84633 1.46206 0.90499 0.89748 0.87257 0.86237 0.86029 0.91721 0.93351 0.87936 0.86182 0.71276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.79 12.31 21.82 0.27 -44.52 15 2 C 0.00 0.12 4.94 85.25 0.42 0.54 15 3 Si 1.11 43.24 30.00 68.60 2.06 45.29 15 4 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 7 C -0.54 -28.23 8.05 23.46 0.19 -28.04 15 8 H 0.08 3.88 6.15 -2.91 -0.02 3.86 15 9 C 0.08 3.90 5.30 -21.29 -0.11 3.79 15 10 C -0.24 -12.30 7.95 22.73 0.18 -12.12 15 11 C -0.10 -4.28 10.02 22.22 0.22 -4.06 15 12 C -0.25 -10.12 10.05 22.46 0.23 -9.89 15 13 C -0.08 -3.31 9.66 22.22 0.21 -3.10 15 14 C -0.21 -9.36 5.19 -19.40 -0.10 -9.46 15 15 C -0.03 -1.25 3.97 29.85 0.12 -1.14 15 16 C -0.10 -3.35 5.68 29.85 0.17 -3.19 15 17 C 0.49 15.00 8.33 71.23 0.59 15.60 15 18 O -0.55 -20.42 16.74 21.96 0.37 -20.05 15 19 O -0.51 -11.59 13.42 -51.43 -0.69 -12.28 15 20 H 0.28 16.06 6.68 -92.71 -0.62 15.44 15 21 H 0.08 4.57 6.49 -2.91 -0.02 4.55 15 22 H 0.11 4.32 8.06 -2.91 -0.02 4.30 15 23 H 0.12 4.13 8.06 -2.91 -0.02 4.11 15 24 H 0.12 4.16 8.06 -2.91 -0.02 4.14 15 25 H 0.06 2.41 8.01 -2.39 -0.02 2.39 15 26 H 0.05 2.18 7.01 -2.39 -0.02 2.16 15 27 H 0.10 3.56 7.30 -2.39 -0.02 3.54 15 28 H 0.12 3.39 8.14 -2.39 -0.02 3.37 15 29 H 0.43 5.51 9.10 -74.06 -0.67 4.84 15 Total: -1.00 -62.22 256.02 4.77 -57.45 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.65 Total: 25.18 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 2.12 Total: -51.07 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.27 Total: -44.52 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.32 Total: -32.33 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.06 Total: 45.29 kcal Total: -62.22 4.77 -57.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060144985.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.016 kcal (2) G-P(sol) polarization free energy of solvation -62.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds