Wall clock time and date at job start Mon Mar 30 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 119.99785 * 2 1 4 4 H 1.48501 * 109.47477 * 270.00243 * 3 2 1 5 5 H 1.48499 * 109.47393 * 30.00838 * 3 2 1 6 6 H 1.48504 * 109.46797 * 150.00290 * 3 2 1 7 7 C 1.38648 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00554 * 359.97438 * 7 2 1 9 9 O 1.34835 * 119.99994 * 180.27309 * 7 2 1 10 10 C 1.35747 * 117.00404 * 174.65964 * 9 7 2 11 11 C 1.38797 * 119.96139 * 5.60192 * 10 9 7 12 12 C 1.38068 * 119.85531 * 179.97438 * 11 10 9 13 13 C 1.38212 * 120.01318 * 359.97438 * 12 11 10 14 14 C 1.38532 * 120.36312 * 0.02562 * 13 12 11 15 15 C 1.38128 * 119.88863 * 359.74242 * 14 13 12 16 16 C 1.51361 * 109.79298 * 179.83635 * 15 14 13 17 17 C 1.54349 * 105.22096 * 343.18110 * 16 15 14 18 18 C 1.51379 * 130.35808 * 180.02562 * 14 13 12 19 19 H 1.09000 * 110.30115 * 316.19628 * 18 14 13 20 20 O 1.42895 * 110.30760 * 78.25040 * 18 14 13 21 21 H 0.96999 * 120.00122 * 359.97438 * 1 2 3 22 22 H 1.08005 * 120.07244 * 359.96318 * 11 10 9 23 23 H 1.08000 * 119.99477 * 179.97438 * 12 11 10 24 24 H 1.07997 * 119.81599 * 180.02562 * 13 12 11 25 25 H 1.08994 * 110.44401 * 224.15124 * 16 15 14 26 26 H 1.09003 * 110.18401 * 102.07264 * 16 15 14 27 27 H 1.09003 * 110.82252 * 267.90512 * 17 16 15 28 28 H 1.08990 * 110.82526 * 144.35065 * 17 16 15 29 29 H 0.96697 * 113.99940 * 298.55311 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4471 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2008 0.0050 10 6 3.9730 -2.4053 0.1167 11 6 3.2215 -3.5722 0.1015 12 6 3.8502 -4.7962 0.2147 13 6 5.2250 -4.8580 0.3424 14 6 5.9798 -3.6964 0.3581 15 6 5.3569 -2.4692 0.2404 16 6 6.3895 -1.3636 0.2892 17 6 7.6576 -2.0190 0.8764 18 6 7.4756 -3.5009 0.4845 19 1 7.8776 -4.1512 1.2615 20 8 8.1177 -3.7662 -0.7642 21 1 -0.4850 0.8400 0.0004 22 1 2.1472 -3.5227 0.0015 23 1 3.2676 -5.7055 0.2036 24 1 5.7136 -5.8171 0.4303 25 1 6.0494 -0.5532 0.9339 26 1 6.5876 -0.9894 -0.7152 27 1 7.6862 -1.9051 1.9601 28 1 8.5555 -1.6046 0.4183 29 1 8.0003 -4.6718 -1.0822 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062800904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:24 Heat of formation + Delta-G solvation = -53.005109 kcal Electronic energy + Delta-G solvation = -14600.717657 eV Core-core repulsion = 12068.377228 eV Total energy + Delta-G solvation = -2532.340429 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.90949 -37.90291 -35.80579 -33.90464 -32.40698 -29.45576 -28.54829 -26.07313 -25.20684 -21.76406 -20.77311 -20.16727 -17.90459 -17.35264 -16.79455 -15.27721 -14.86886 -14.40879 -14.19415 -13.94457 -13.45294 -13.28248 -13.00803 -12.31484 -12.17433 -11.75580 -11.45867 -11.23063 -10.93981 -10.82119 -10.67463 -10.46526 -10.19706 -9.83769 -9.42491 -8.89293 -8.07591 -7.36915 -6.43504 -4.10012 1.94823 2.19712 3.21630 3.24511 3.38941 4.22312 4.28093 4.51343 4.73051 4.85361 5.04697 5.16322 5.28034 5.46241 5.68416 5.74483 5.88284 5.94196 6.10156 6.23483 6.35816 6.44709 6.53910 6.78293 7.09544 7.12411 7.24185 7.56009 7.74875 7.76008 8.01370 8.91793 9.54083 10.64094 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.009185 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.620493 B = 3047.561131 C = 3697.852715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.214 6.214 10 C 0.168 3.832 11 C -0.214 4.214 12 C -0.079 4.079 13 C -0.183 4.183 14 C -0.106 4.106 15 C -0.149 4.149 16 C -0.067 4.067 17 C -0.113 4.113 18 C 0.150 3.850 19 H 0.059 0.941 20 O -0.559 6.559 21 H 0.280 0.720 22 H 0.136 0.864 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.727 -5.872 1.433 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.123 0.877 9 O -0.119 6.119 10 C 0.116 3.884 11 C -0.234 4.234 12 C -0.097 4.097 13 C -0.202 4.202 14 C -0.107 4.107 15 C -0.151 4.151 16 C -0.104 4.104 17 C -0.150 4.150 18 C 0.091 3.909 19 H 0.077 0.923 20 O -0.364 6.364 21 H 0.090 0.910 22 H 0.154 0.846 23 H 0.131 0.869 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 11.775 -4.857 1.481 12.823 hybrid contribution -0.318 -0.058 -0.082 0.333 sum 11.457 -4.915 1.399 12.546 Atomic orbital electron populations 1.69646 1.05570 1.28516 1.47971 1.24460 0.95016 0.98821 0.95616 0.86193 0.80364 0.81424 0.79036 1.19828 1.20790 1.18276 1.20781 0.76952 0.96631 1.52230 0.87660 1.83585 1.22516 1.25659 1.80188 1.18695 0.90116 0.85785 0.93780 1.21234 1.01147 0.91687 1.09295 1.20692 0.93900 0.96852 0.98296 1.20111 0.93647 0.96139 1.10279 1.20726 0.95460 0.93270 1.01242 1.19550 0.90954 0.95595 1.08955 1.20784 0.91858 0.96443 1.01285 1.22295 0.98807 0.93173 1.00726 1.21125 0.87277 0.96935 0.85553 0.92300 1.86515 1.75791 1.35232 1.38902 0.91031 0.84617 0.86859 0.87691 0.90989 0.90918 0.89999 0.90045 0.77718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.96 55.48 0.77 -24.63 15 2 C 0.06 1.80 5.49 -17.52 -0.10 1.71 15 3 Si 0.90 21.74 28.62 -169.99 -4.86 16.87 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.26 -6.22 7.11 56.52 0.40 -5.81 15 7 C -0.39 -11.04 9.94 30.88 0.31 -10.73 15 8 H 0.11 3.03 5.43 -52.49 -0.28 2.75 15 9 O -0.21 -5.71 8.54 0.04 0.00 -5.71 15 10 C 0.17 3.98 6.65 -39.06 -0.26 3.72 15 11 C -0.21 -4.69 9.16 -39.44 -0.36 -5.05 15 12 C -0.08 -1.44 10.04 -39.65 -0.40 -1.84 15 13 C -0.18 -3.08 10.04 -39.48 -0.40 -3.48 15 14 C -0.11 -1.89 5.79 -104.22 -0.60 -2.49 15 15 C -0.15 -3.08 6.12 -104.02 -0.64 -3.72 15 16 C -0.07 -1.20 6.71 -26.85 -0.18 -1.38 15 17 C -0.11 -1.62 6.81 -25.31 -0.17 -1.79 15 18 C 0.15 2.19 4.23 -26.83 -0.11 2.07 15 19 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 20 O -0.56 -7.94 13.36 -35.23 -0.47 -8.41 15 21 H 0.28 7.46 8.31 -40.82 -0.34 7.12 15 22 H 0.14 3.08 5.63 -52.48 -0.30 2.78 15 23 H 0.11 1.72 8.06 -52.49 -0.42 1.30 15 24 H 0.10 1.43 8.06 -52.49 -0.42 1.01 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.08 1.06 8.10 -51.93 -0.42 0.64 15 29 H 0.38 3.87 9.10 45.56 0.41 4.29 15 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -30.52 252.03 -5.93 -36.45 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.26 Total: 4.59 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: -2.91 Total: -22.97 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 0.77 Total: -24.63 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.47 Total: -14.12 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.52 -5.93 -36.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062800904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.551 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds