Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31887 * 120.54624 * 2 1 4 4 C 1.32744 * 121.18703 * 179.97438 * 3 2 1 5 5 N 1.38330 * 118.86272 * 180.02562 * 4 3 2 6 6 C 1.35500 * 119.99760 * 179.97438 * 5 4 3 7 7 N 5.69411 * 154.55169 * 0.03581 * 2 1 3 8 8 N 1.32636 * 122.27717 * 359.97438 * 4 3 2 9 9 C 1.32355 * 120.91936 * 359.70344 * 8 4 3 10 10 O 1.35293 * 120.63515 * 180.31258 * 9 8 4 11 11 C 1.40976 * 120.54077 * 179.97438 * 2 1 3 12 12 C 1.41048 * 121.00952 * 0.02562 * 11 2 1 13 13 H 1.08001 * 120.00103 * 37.95875 * 12 11 2 14 14 C 1.39891 * 120.00038 * 217.67967 * 12 11 2 15 15 N 1.30919 * 119.99775 * 20.50799 * 14 12 11 16 16 Si 1.86796 * 120.00044 * 200.50580 * 14 12 11 17 17 H 1.48493 * 109.47252 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46966 * 120.00410 * 16 14 12 19 19 H 1.48504 * 109.47148 * 239.99921 * 16 14 12 20 20 H 1.09010 * 109.47167 * 270.02426 * 1 2 3 21 21 H 1.09000 * 109.47193 * 30.01671 * 1 2 3 22 22 H 1.08991 * 109.47813 * 150.02286 * 1 2 3 23 23 H 0.96997 * 119.99601 * 359.97438 * 5 4 3 24 24 H 0.96699 * 113.99262 * 273.25784 * 10 9 8 25 25 H 0.97002 * 120.00233 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1772 1.1358 0.0000 4 6 3.5046 1.1507 0.0005 5 7 4.1587 2.3695 0.0010 6 6 5.5131 2.4115 0.0021 7 7 6.6485 2.4467 0.0015 8 7 4.2254 0.0373 0.0015 9 6 3.6418 -1.1507 0.0080 10 8 4.3827 -2.2827 0.0154 11 6 2.2233 -1.2142 0.0005 12 6 1.5513 -2.4543 0.0006 13 1 0.6459 -2.5779 -0.5751 14 6 2.0609 -3.5259 0.7415 15 7 2.8932 -3.3031 1.7272 16 14 1.5537 -5.2747 0.3245 17 1 0.6115 -5.2565 -0.8230 18 1 2.7571 -6.0664 -0.0361 19 1 0.8898 -5.8914 1.5011 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5134 23 1 3.6478 3.1941 0.0006 24 1 4.6408 -2.5894 -0.8646 25 1 3.2462 -4.0461 2.2413 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072417299.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = 44.028478 kcal Electronic energy + Delta-G solvation = -14323.320764 eV Core-core repulsion = 11723.940435 eV Total energy + Delta-G solvation = -2599.380329 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73787 -37.10044 -35.99428 -34.39938 -33.38740 -32.17559 -30.22775 -27.76409 -25.17441 -22.31602 -21.86578 -18.94880 -18.16508 -17.58386 -16.14357 -15.94442 -15.17981 -14.62590 -13.72564 -13.58357 -13.07748 -12.94851 -12.34606 -12.03857 -11.92722 -11.80368 -11.62869 -11.37053 -11.08665 -10.74494 -10.42965 -9.75858 -9.45288 -9.09666 -9.01836 -8.04269 -7.45850 -6.95516 -4.53611 2.32397 2.35026 2.84080 2.97113 3.01374 3.04505 3.46267 3.70914 3.81548 4.51300 4.76243 5.21534 5.49023 5.73221 6.29222 6.38011 6.45257 6.59212 6.81353 6.93536 7.06390 7.27464 7.77210 7.89325 8.10342 8.46085 8.53807 8.65203 8.86963 9.46673 10.02383 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038180 B = 0.009717 C = 0.008049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.198895 B = 2880.881737 C = 3477.681338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.083 3.917 3 N -0.520 5.520 4 C 0.424 3.576 5 N -0.579 5.579 6 C 0.442 3.558 7 N -0.450 5.450 8 N -0.550 5.550 9 C 0.302 3.698 10 O -0.447 6.447 11 C 0.005 3.995 12 C -0.446 4.446 13 H 0.091 0.909 14 C 0.083 3.917 15 N -0.746 5.746 16 Si 0.907 3.093 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.275 1.275 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.072 0.928 23 H 0.434 0.566 24 H 0.367 0.633 25 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 1.153 -3.154 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.066 4.066 3 N -0.240 5.240 4 C 0.072 3.928 5 N -0.223 5.223 6 C 0.036 3.964 7 N -0.146 5.146 8 N -0.280 5.280 9 C 0.110 3.890 10 O -0.248 6.248 11 C -0.004 4.004 12 C -0.476 4.476 13 H 0.109 0.891 14 C -0.141 4.141 15 N -0.368 5.368 16 Si 0.731 3.269 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.200 1.200 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.275 0.725 24 H 0.221 0.779 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.173 1.845 -2.334 3.684 hybrid contribution -1.024 -1.450 -0.434 1.827 sum -3.197 0.395 -2.768 4.247 Atomic orbital electron populations 1.20266 0.89209 1.01497 1.01694 1.21221 0.95621 0.86276 1.03456 1.66729 1.06406 1.32633 1.18272 1.17505 0.84633 0.83247 1.07458 1.38194 0.97306 1.06799 1.80021 1.23157 0.86095 0.95552 0.91578 1.81797 1.05586 1.06057 1.21154 1.66541 1.43405 0.98825 1.19216 1.19108 0.87183 0.82684 0.99975 1.84881 1.72179 1.37067 1.30688 1.18977 0.91658 0.94866 0.94849 1.19201 1.09615 0.93731 1.25033 0.89147 1.25811 0.93536 1.01297 0.93432 1.69731 1.20679 1.34951 1.11450 0.86276 0.79490 0.81502 0.79624 1.18322 1.19577 1.19988 0.91833 0.92603 0.90952 0.72474 0.77898 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 9.85 36.00 0.35 -0.88 15 2 C 0.08 1.84 6.89 -81.54 -0.56 1.28 15 3 N -0.52 -11.42 10.36 -9.59 -0.10 -11.52 15 4 C 0.42 9.50 8.37 -322.41 -2.70 6.80 15 5 N -0.58 -10.59 5.41 17.76 0.10 -10.49 15 6 C 0.44 8.58 15.89 -102.19 -1.62 6.96 15 7 N -0.45 -9.21 18.54 41.27 0.77 -8.44 15 8 N -0.55 -13.62 9.51 -13.37 -0.13 -13.75 15 9 C 0.30 7.53 7.34 -15.89 -0.12 7.41 15 10 O -0.45 -10.55 10.51 -17.57 -0.18 -10.74 15 11 C 0.01 0.13 5.40 -106.36 -0.57 -0.45 15 12 C -0.45 -10.34 8.16 -37.90 -0.31 -10.65 15 13 H 0.09 1.95 6.77 -52.49 -0.36 1.59 15 14 C 0.08 1.89 4.47 -17.32 -0.08 1.81 15 15 N -0.75 -18.45 11.18 55.55 0.62 -17.83 15 16 Si 0.91 16.96 29.60 -169.99 -5.03 11.93 15 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 18 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 20 H 0.06 1.09 8.14 -51.92 -0.42 0.67 15 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.07 1.22 6.56 -51.93 -0.34 0.88 15 23 H 0.43 6.16 8.92 -40.82 -0.36 5.79 15 24 H 0.37 6.93 9.06 45.56 0.41 7.35 15 25 H 0.29 6.53 8.30 -40.82 -0.34 6.19 15 LS Contribution 238.70 15.07 3.60 3.60 Total: -1.00 -29.18 238.70 -6.60 -35.78 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -0.63 Total: 9.18 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: -5.61 Total: 12.29 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 1.26 Total: -62.04 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.18 Total: -10.74 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.18 -6.60 -35.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072417299.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.807 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds