Wall clock time and date at job start Mon Mar 30 2020 02:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31887 * 120.54624 * 2 1 4 4 C 1.32744 * 121.18703 * 179.97438 * 3 2 1 5 5 N 1.38330 * 118.86272 * 180.02562 * 4 3 2 6 6 C 1.35500 * 119.99760 * 179.97438 * 5 4 3 7 7 N 5.69411 * 154.55169 * 0.03581 * 2 1 3 8 8 N 1.32636 * 122.27717 * 359.97438 * 4 3 2 9 9 C 1.32355 * 120.91936 * 359.70344 * 8 4 3 10 10 O 1.35293 * 120.63515 * 180.31258 * 9 8 4 11 11 C 1.40976 * 120.54077 * 179.97438 * 2 1 3 12 12 C 1.41048 * 121.00952 * 0.02562 * 11 2 1 13 13 H 1.08001 * 120.00103 * 37.95875 * 12 11 2 14 14 C 1.39891 * 120.00038 * 217.67967 * 12 11 2 15 15 N 1.30919 * 119.99775 * 20.50799 * 14 12 11 16 16 Si 1.86796 * 120.00044 * 200.50580 * 14 12 11 17 17 H 1.48493 * 109.47252 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46966 * 120.00410 * 16 14 12 19 19 H 1.48504 * 109.47148 * 239.99921 * 16 14 12 20 20 H 1.09010 * 109.47167 * 270.02426 * 1 2 3 21 21 H 1.09000 * 109.47193 * 30.01671 * 1 2 3 22 22 H 1.08991 * 109.47813 * 150.02286 * 1 2 3 23 23 H 0.96997 * 119.99601 * 359.97438 * 5 4 3 24 24 H 0.96699 * 113.99262 * 273.25784 * 10 9 8 25 25 H 0.97002 * 120.00233 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1772 1.1358 0.0000 4 6 3.5046 1.1507 0.0005 5 7 4.1587 2.3695 0.0010 6 6 5.5131 2.4115 0.0021 7 7 6.6485 2.4467 0.0015 8 7 4.2254 0.0373 0.0015 9 6 3.6418 -1.1507 0.0080 10 8 4.3827 -2.2827 0.0154 11 6 2.2233 -1.2142 0.0005 12 6 1.5513 -2.4543 0.0006 13 1 0.6459 -2.5779 -0.5751 14 6 2.0609 -3.5259 0.7415 15 7 2.8932 -3.3031 1.7272 16 14 1.5537 -5.2747 0.3245 17 1 0.6115 -5.2565 -0.8230 18 1 2.7571 -6.0664 -0.0361 19 1 0.8898 -5.8914 1.5011 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3634 -0.8901 -0.5134 23 1 3.6478 3.1941 0.0006 24 1 4.6408 -2.5894 -0.8646 25 1 3.2462 -4.0461 2.2413 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072417299.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:08 Heat of formation + Delta-G solvation = 26.033880 kcal Electronic energy + Delta-G solvation = -14324.101068 eV Core-core repulsion = 11723.940435 eV Total energy + Delta-G solvation = -2600.160633 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.47543 -38.76501 -37.70712 -36.08050 -35.05951 -33.91088 -31.94244 -29.36181 -26.90003 -24.05466 -23.56885 -20.58316 -19.85611 -19.33653 -17.83992 -17.67311 -16.85766 -16.31349 -15.41713 -15.20211 -14.67925 -14.56236 -13.96850 -13.68314 -13.51078 -13.41484 -13.13704 -12.90818 -12.75174 -12.27129 -12.03421 -11.43075 -11.12482 -10.85282 -10.71849 -9.82924 -9.19583 -8.65581 -6.30186 0.55628 0.58944 1.21805 1.48149 1.51515 1.62676 1.94974 2.10992 2.25787 2.81483 3.04927 3.46565 3.87147 4.05906 4.71572 4.81566 5.01572 5.05216 5.22583 5.28912 5.47420 5.68385 6.14872 6.20009 6.42391 6.75811 6.89075 6.92811 7.16924 7.72411 8.34481 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038180 B = 0.009717 C = 0.008049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.198895 B = 2880.881737 C = 3477.681338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.083 3.917 3 N -0.517 5.517 4 C 0.419 3.581 5 N -0.561 5.561 6 C 0.451 3.549 7 N -0.466 5.466 8 N -0.577 5.577 9 C 0.275 3.725 10 O -0.460 6.460 11 C -0.022 4.022 12 C -0.459 4.459 13 H 0.104 0.896 14 C 0.049 3.951 15 N -0.791 5.791 16 Si 0.979 3.021 17 H -0.248 1.248 18 H -0.274 1.274 19 H -0.274 1.274 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.453 0.547 24 H 0.382 0.618 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 1.045 -3.694 6.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 N -0.238 5.238 4 C 0.067 3.933 5 N -0.208 5.208 6 C 0.045 3.955 7 N -0.163 5.163 8 N -0.308 5.308 9 C 0.086 3.914 10 O -0.263 6.263 11 C -0.031 4.031 12 C -0.488 4.488 13 H 0.122 0.878 14 C -0.171 4.171 15 N -0.414 5.414 16 Si 0.800 3.200 17 H -0.171 1.171 18 H -0.199 1.199 19 H -0.199 1.199 20 H 0.090 0.910 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.298 0.702 24 H 0.237 0.763 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.591 1.767 -2.891 4.937 hybrid contribution -0.586 -1.324 -0.269 1.472 sum -4.177 0.443 -3.159 5.256 Atomic orbital electron populations 1.20359 0.86090 1.03161 1.02653 1.22003 0.97719 0.85819 1.01143 1.66900 1.05955 1.32339 1.18570 1.17912 0.85129 0.83823 1.06477 1.38088 0.96874 1.06491 1.79310 1.23134 0.86243 0.94985 0.91168 1.81799 1.06149 1.06635 1.21668 1.66569 1.44233 0.99512 1.20516 1.19375 0.87889 0.82890 1.01259 1.84819 1.72252 1.37070 1.32139 1.19323 0.91706 0.96195 0.95834 1.19482 1.10236 0.93876 1.25219 0.87775 1.26607 0.92940 1.04945 0.92597 1.69816 1.22523 1.36162 1.12910 0.85198 0.78977 0.76313 0.79503 1.17090 1.19893 1.19888 0.91017 0.90271 0.89959 0.70158 0.76278 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 9.85 71.23 0.70 -1.46 15 2 C 0.08 3.57 6.89 43.22 0.30 3.87 15 3 N -0.52 -21.92 10.36 -184.25 -1.91 -23.83 15 4 C 0.42 18.42 8.37 261.35 2.19 20.60 15 5 N -0.56 -19.73 5.41 -97.73 -0.53 -20.26 15 6 C 0.45 17.05 15.89 184.39 2.93 19.98 15 7 N -0.47 -18.74 18.54 17.21 0.32 -18.43 15 8 N -0.58 -28.60 9.51 -309.24 -2.94 -31.54 15 9 C 0.28 13.82 7.34 85.55 0.63 14.45 15 10 O -0.46 -22.05 10.51 -85.80 -0.90 -22.96 15 11 C -0.02 -1.05 5.40 -20.99 -0.11 -1.16 15 12 C -0.46 -20.81 8.16 23.36 0.19 -20.62 15 13 H 0.10 4.29 6.77 -2.91 -0.02 4.27 15 14 C 0.05 2.20 4.47 85.23 0.38 2.58 15 15 N -0.79 -39.32 11.18 21.82 0.24 -39.08 15 16 Si 0.98 33.99 29.60 68.60 2.03 36.02 15 17 H -0.25 -8.06 7.11 99.48 0.71 -7.35 15 18 H -0.27 -9.56 7.11 99.48 0.71 -8.85 15 19 H -0.27 -9.40 7.11 99.48 0.71 -8.69 15 20 H 0.07 2.28 8.14 -2.38 -0.02 2.26 15 21 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.08 2.56 6.56 -2.39 -0.02 2.54 15 23 H 0.45 11.96 8.92 -92.71 -0.83 11.14 15 24 H 0.38 14.72 9.06 -74.06 -0.67 14.05 15 25 H 0.29 13.27 8.30 -92.71 -0.77 12.51 15 Total: -1.00 -61.02 238.70 3.30 -57.73 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.22 Total: 24.10 kcal Atomic # 6 Polarization: 31.04 SS G_CDS: 7.20 Total: 38.24 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -4.81 Total: -133.13 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.90 Total: -22.96 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Total: -61.02 3.30 -57.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072417299.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.761 kcal (2) G-P(sol) polarization free energy of solvation -61.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds