Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34491 * 126.29151 * 2 1 4 4 H 0.97009 * 125.78125 * 0.05079 * 3 2 1 5 5 N 1.39946 * 108.42808 * 180.02562 * 3 2 1 6 6 C 1.30514 * 108.85341 * 359.97438 * 5 3 2 7 7 C 1.37874 * 126.29449 * 180.02562 * 2 1 3 8 8 C 1.47653 * 126.38536 * 359.94233 * 7 2 1 9 9 N 1.31850 * 126.44151 * 179.97438 * 8 7 2 10 10 C 1.35562 * 105.50775 * 179.97438 * 9 8 7 11 11 C 1.41779 * 126.44004 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99961 * 359.97438 * 11 10 9 13 13 C 1.39932 * 120.00460 * 179.97438 * 11 10 9 14 14 N 1.30764 * 119.99644 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00489 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47297 * 59.99589 * 15 13 11 17 17 H 1.48502 * 109.47462 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46939 * 300.00112 * 15 13 11 19 19 N 1.31919 * 107.12223 * 359.97438 * 10 9 8 20 20 O 1.21270 * 110.13505 * 359.75130 * 19 10 9 21 21 H 1.09008 * 109.47052 * 269.95770 * 1 2 3 22 22 H 1.08995 * 109.47547 * 29.95593 * 1 2 3 23 23 H 1.09002 * 109.47109 * 149.96469 * 1 2 3 24 24 H 1.08001 * 125.95900 * 180.26981 * 6 5 3 25 25 H 0.96996 * 119.99951 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3030 1.0840 0.0000 4 1 2.0044 2.0070 0.0007 5 7 3.6350 0.6547 -0.0006 6 6 3.6576 -0.6502 -0.0004 7 6 2.3231 -1.1112 -0.0005 8 6 1.8835 -2.5208 0.0001 9 7 2.6629 -3.5843 -0.0009 10 6 1.8236 -4.6488 0.0008 11 6 2.1979 -6.0163 0.0011 12 1 3.2426 -6.2903 -0.0005 13 6 1.2138 -7.0111 0.0034 14 7 -0.0511 -6.6795 0.0058 15 14 1.7069 -8.8128 0.0030 16 1 2.5152 -9.1050 1.2139 17 1 0.4872 -9.6599 0.0052 18 1 2.5104 -9.1059 -1.2110 19 7 0.5931 -4.1732 0.0032 20 8 0.6142 -2.9607 0.0081 21 1 -0.3633 -0.0008 1.0277 22 1 -0.3634 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5144 24 1 4.5426 -1.2692 0.0034 25 1 -0.7333 -7.3690 0.0070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074276531.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = 124.992537 kcal Electronic energy + Delta-G solvation = -14109.897701 eV Core-core repulsion = 11514.028237 eV Total energy + Delta-G solvation = -2595.869464 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.10001 -40.98551 -34.37145 -33.13748 -32.55429 -31.68087 -29.23690 -26.89752 -26.41265 -22.42001 -22.04048 -21.07131 -19.72041 -17.36249 -16.81180 -16.06863 -15.60739 -14.78190 -14.65719 -14.10155 -13.80771 -13.05309 -12.85192 -12.69363 -12.00716 -11.32447 -11.25781 -11.01411 -10.66335 -10.36552 -10.31059 -10.03356 -9.75934 -9.38432 -8.99451 -8.67057 -7.49922 -6.57746 -4.58213 1.72132 2.42863 2.85009 3.08126 3.14367 3.17980 3.61898 4.02296 4.19006 4.37894 4.77207 4.86180 5.11082 5.40088 5.58948 5.62678 5.86722 6.09222 6.21411 6.59815 6.67455 7.08768 7.27248 7.31647 7.70593 7.85762 8.35733 8.58361 8.90826 10.37289 10.50179 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.066386 B = 0.006974 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.672493 B = 4013.743442 C = 4420.270329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 N -0.470 5.470 4 H 0.439 0.561 5 N -0.305 5.305 6 C 0.102 3.898 7 C -0.150 4.150 8 C 0.196 3.804 9 N -0.515 5.515 10 C 0.294 3.706 11 C -0.435 4.435 12 H 0.091 0.909 13 C 0.071 3.929 14 N -0.775 5.775 15 Si 0.924 3.076 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.265 1.265 19 N -0.426 5.426 20 O 0.020 5.980 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.194 0.806 25 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.212 10.792 0.005 10.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.015 4.015 3 N -0.178 5.178 4 H 0.283 0.717 5 N -0.126 5.126 6 C -0.086 4.086 7 C -0.163 4.163 8 C -0.024 4.024 9 N -0.256 5.256 10 C 0.042 3.958 11 C -0.475 4.475 12 H 0.109 0.891 13 C -0.150 4.150 14 N -0.404 5.404 15 Si 0.748 3.252 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.190 1.190 19 N -0.154 5.154 20 O -0.022 6.022 21 H 0.105 0.895 22 H 0.091 0.909 23 H 0.118 0.882 24 H 0.211 0.789 25 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.372 11.142 0.005 11.148 hybrid contribution -0.415 -1.030 0.012 1.111 sum -0.042 10.111 0.017 10.111 Atomic orbital electron populations 1.20592 0.86234 1.04613 1.04125 1.21443 0.94662 0.86949 0.98480 1.45935 1.04312 1.08004 1.59558 0.71700 1.77148 0.95992 1.13165 1.26293 1.23968 0.97408 0.91005 0.96219 1.17287 0.92543 0.86879 1.19617 1.24886 0.83358 0.93213 1.00927 1.72235 1.31719 0.97441 1.24245 1.22198 0.82747 0.94903 0.95991 1.18373 0.94788 0.85589 1.48789 0.89096 1.25817 0.94382 1.01613 0.93204 1.69871 1.00409 1.35399 1.34719 0.86130 0.78594 0.80703 0.79792 1.18987 1.20423 1.18990 1.75541 1.20148 0.86086 1.33595 1.85297 1.28668 1.19230 1.68988 0.89522 0.90949 0.88203 0.78897 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 10.05 36.00 0.36 -0.76 15 2 C 0.12 1.70 7.30 -81.56 -0.60 1.11 15 3 N -0.47 -5.86 7.30 33.86 0.25 -5.61 15 4 H 0.44 3.60 8.96 -182.71 -1.64 1.96 15 5 N -0.30 -4.64 12.64 30.85 0.39 -4.25 15 6 C 0.10 1.71 12.01 -16.99 -0.20 1.50 15 7 C -0.15 -2.77 6.12 -105.07 -0.64 -3.42 15 8 C 0.20 4.62 8.16 -13.84 -0.11 4.50 15 9 N -0.52 -13.76 11.62 -11.41 -0.13 -13.90 15 10 C 0.29 8.67 7.67 -157.67 -1.21 7.46 15 11 C -0.43 -12.54 9.52 -37.60 -0.36 -12.90 15 12 H 0.09 2.49 7.85 -52.48 -0.41 2.07 15 13 C 0.07 1.91 5.49 -17.37 -0.10 1.82 15 14 N -0.78 -21.99 11.97 55.54 0.66 -21.33 15 15 Si 0.92 19.81 29.56 -169.99 -5.02 14.78 15 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 17 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 18 H -0.27 -5.57 7.11 56.52 0.40 -5.16 15 19 N -0.43 -12.46 10.46 30.31 0.32 -12.14 15 20 O 0.02 0.50 9.65 16.29 0.16 0.65 15 21 H 0.09 0.91 8.14 -51.92 -0.42 0.49 15 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.10 1.38 6.73 -51.93 -0.35 1.03 15 24 H 0.19 2.98 8.06 -52.49 -0.42 2.56 15 25 H 0.28 7.14 8.29 -40.82 -0.34 6.80 15 LS Contribution 237.01 15.07 3.57 3.57 Total: -1.00 -34.08 237.01 -5.47 -39.55 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -2.80 Total: -0.65 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.86 Total: -0.68 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 1.49 Total: -57.22 kcal Atomic # 8 Polarization: 0.50 SS G_CDS: 0.16 Total: 0.65 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -34.08 -5.47 -39.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276531.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.544 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds