Wall clock time and date at job start Mon Mar 30 2020 02:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34491 * 126.29151 * 2 1 4 4 H 0.97009 * 125.78125 * 0.05079 * 3 2 1 5 5 N 1.39946 * 108.42808 * 180.02562 * 3 2 1 6 6 C 1.30514 * 108.85341 * 359.97438 * 5 3 2 7 7 C 1.37874 * 126.29449 * 180.02562 * 2 1 3 8 8 C 1.47653 * 126.38536 * 359.94233 * 7 2 1 9 9 N 1.31850 * 126.44151 * 179.97438 * 8 7 2 10 10 C 1.35562 * 105.50775 * 179.97438 * 9 8 7 11 11 C 1.41779 * 126.44004 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99961 * 359.97438 * 11 10 9 13 13 C 1.39932 * 120.00460 * 179.97438 * 11 10 9 14 14 N 1.30764 * 119.99644 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00489 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47297 * 59.99589 * 15 13 11 17 17 H 1.48502 * 109.47462 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46939 * 300.00112 * 15 13 11 19 19 N 1.31919 * 107.12223 * 359.97438 * 10 9 8 20 20 O 1.21270 * 110.13505 * 359.75130 * 19 10 9 21 21 H 1.09008 * 109.47052 * 269.95770 * 1 2 3 22 22 H 1.08995 * 109.47547 * 29.95593 * 1 2 3 23 23 H 1.09002 * 109.47109 * 149.96469 * 1 2 3 24 24 H 1.08001 * 125.95900 * 180.26981 * 6 5 3 25 25 H 0.96996 * 119.99951 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3030 1.0840 0.0000 4 1 2.0044 2.0070 0.0007 5 7 3.6350 0.6547 -0.0006 6 6 3.6576 -0.6502 -0.0004 7 6 2.3231 -1.1112 -0.0005 8 6 1.8835 -2.5208 0.0001 9 7 2.6629 -3.5843 -0.0009 10 6 1.8236 -4.6488 0.0008 11 6 2.1979 -6.0163 0.0011 12 1 3.2426 -6.2903 -0.0005 13 6 1.2138 -7.0111 0.0034 14 7 -0.0511 -6.6795 0.0058 15 14 1.7069 -8.8128 0.0030 16 1 2.5152 -9.1050 1.2139 17 1 0.4872 -9.6599 0.0052 18 1 2.5104 -9.1059 -1.2110 19 7 0.5931 -4.1732 0.0032 20 8 0.6142 -2.9607 0.0081 21 1 -0.3633 -0.0008 1.0277 22 1 -0.3634 0.8903 -0.5131 23 1 -0.3633 -0.8897 -0.5144 24 1 4.5426 -1.2692 0.0034 25 1 -0.7333 -7.3690 0.0070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074276531.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:14 Heat of formation + Delta-G solvation = 98.099232 kcal Electronic energy + Delta-G solvation = -14111.063882 eV Core-core repulsion = 11514.028237 eV Total energy + Delta-G solvation = -2597.035645 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.13117 -42.25032 -36.40645 -35.09160 -33.77291 -33.30536 -30.88971 -28.55257 -28.10902 -24.19359 -23.77421 -22.57314 -21.38084 -19.01038 -18.26637 -18.07972 -17.63340 -16.44984 -15.99778 -15.58081 -15.30558 -14.76919 -14.11581 -13.66141 -13.28936 -13.06560 -13.04232 -12.95077 -12.35589 -12.24291 -11.99449 -11.80433 -11.53012 -11.05974 -10.70520 -10.47106 -9.19705 -8.59881 -6.74333 0.34469 0.95912 1.37042 1.39927 1.55325 1.73631 1.88333 2.23210 2.27048 2.70344 3.28291 3.36705 3.66133 4.00954 4.20339 4.58068 4.64556 4.70982 4.86198 5.10276 5.17123 5.25452 5.43569 5.82068 6.21861 6.24283 6.48867 6.54655 6.80695 8.38133 8.49772 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.066386 B = 0.006974 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.672493 B = 4013.743442 C = 4420.270329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.156 3.844 3 N -0.443 5.443 4 H 0.462 0.538 5 N -0.306 5.306 6 C 0.101 3.899 7 C -0.206 4.206 8 C 0.221 3.779 9 N -0.548 5.548 10 C 0.264 3.736 11 C -0.472 4.472 12 H 0.093 0.907 13 C 0.024 3.976 14 N -0.813 5.813 15 Si 1.008 2.992 16 H -0.256 1.256 17 H -0.265 1.265 18 H -0.256 1.256 19 N -0.463 5.463 20 O 0.020 5.980 21 H 0.103 0.897 22 H 0.118 0.882 23 H 0.075 0.925 24 H 0.197 0.803 25 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 11.907 0.034 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.020 3.980 3 N -0.152 5.152 4 H 0.311 0.689 5 N -0.127 5.127 6 C -0.087 4.087 7 C -0.221 4.221 8 C 0.002 3.998 9 N -0.288 5.288 10 C 0.012 3.988 11 C -0.512 4.512 12 H 0.111 0.889 13 C -0.193 4.193 14 N -0.442 5.442 15 Si 0.827 3.173 16 H -0.180 1.180 17 H -0.190 1.190 18 H -0.180 1.180 19 N -0.194 5.194 20 O -0.020 6.020 21 H 0.121 0.879 22 H 0.137 0.863 23 H 0.094 0.906 24 H 0.214 0.786 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.233 12.341 0.033 12.343 hybrid contribution -0.393 -1.080 0.003 1.149 sum -0.159 11.260 0.036 11.262 Atomic orbital electron populations 1.20767 0.83796 1.05696 1.05477 1.21757 0.95840 0.86069 0.94381 1.45967 1.03203 1.08854 1.57189 0.68862 1.77146 0.97237 1.12110 1.26254 1.24039 0.97037 0.91559 0.96040 1.17434 0.94344 0.85383 1.24892 1.25606 0.82265 0.94768 0.97164 1.72199 1.32064 0.97790 1.26779 1.22679 0.83487 0.96068 0.96576 1.18815 0.95579 0.86389 1.50432 0.88921 1.26946 0.93873 1.06819 0.91667 1.69973 1.01778 1.37587 1.34841 0.84880 0.78732 0.73449 0.80250 1.18035 1.18954 1.18049 1.75469 1.20668 0.87610 1.35622 1.85207 1.29282 1.18000 1.69531 0.87864 0.86321 0.90642 0.78638 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.05 71.24 0.72 -1.25 15 2 C 0.16 4.09 7.30 42.06 0.31 4.40 15 3 N -0.44 -9.43 7.30 -46.78 -0.34 -9.77 15 4 H 0.46 5.41 8.96 -213.41 -1.91 3.50 15 5 N -0.31 -8.61 12.64 -56.31 -0.71 -9.32 15 6 C 0.10 3.30 12.01 85.61 1.03 4.33 15 7 C -0.21 -7.52 6.12 -20.15 -0.12 -7.64 15 8 C 0.22 10.65 8.16 87.23 0.71 11.36 15 9 N -0.55 -30.40 11.62 -305.25 -3.55 -33.95 15 10 C 0.26 16.24 7.67 135.00 1.04 17.28 15 11 C -0.47 -28.15 9.52 23.56 0.22 -27.93 15 12 H 0.09 5.25 7.85 -2.91 -0.02 5.23 15 13 C 0.02 1.32 5.49 85.26 0.47 1.79 15 14 N -0.81 -47.09 11.97 21.82 0.26 -46.83 15 15 Si 1.01 40.67 29.56 68.60 2.03 42.69 15 16 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 17 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 19 N -0.46 -28.19 10.46 -59.65 -0.62 -28.81 15 20 O 0.02 1.06 9.65 68.35 0.66 1.72 15 21 H 0.10 1.82 8.14 -2.38 -0.02 1.80 15 22 H 0.12 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.07 1.98 6.73 -2.39 -0.02 1.96 15 24 H 0.20 6.07 8.06 -2.91 -0.02 6.05 15 25 H 0.29 14.88 8.29 -92.71 -0.77 14.11 15 Total: -1.00 -77.10 237.01 1.43 -75.67 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -0.66 Total: 6.26 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.37 Total: 2.33 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -4.96 Total: -128.67 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.66 Total: 1.72 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.69 kcal Total: -77.10 1.43 -75.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074276531.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.773 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds