Wall clock time and date at job start Mon Mar 30 2020 02:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00073 * 2 1 4 4 H 1.48505 * 109.46848 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.47316 * 29.99891 * 3 2 1 6 6 H 1.48497 * 109.47037 * 149.99728 * 3 2 1 7 7 C 1.37881 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99780 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00047 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47421 * 180.02562 * 9 7 2 11 11 C 1.36008 * 126.34882 * 265.00468 * 10 9 7 12 12 N 1.30119 * 110.09952 * 179.97438 * 11 10 9 13 13 C 1.35779 * 109.65552 * 0.02562 * 12 11 10 14 14 C 1.39769 * 133.54353 * 180.02562 * 13 12 11 15 15 C 1.37785 * 119.74933 * 179.97438 * 14 13 12 16 16 F 1.35103 * 119.75926 * 180.02562 * 15 14 13 17 17 C 1.38977 * 120.47287 * 0.02562 * 15 14 13 18 18 C 1.37821 * 120.43708 * 359.97438 * 17 15 14 19 19 C 1.38168 * 126.35129 * 84.99545 * 10 9 7 20 20 H 0.97002 * 119.99955 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46895 * 59.99950 * 9 7 2 22 22 H 1.09006 * 109.47541 * 299.99993 * 9 7 2 23 23 H 1.08003 * 124.95548 * 359.97438 * 11 10 9 24 24 H 1.08002 * 120.12445 * 0.25664 * 14 13 12 25 25 H 1.08002 * 119.78557 * 180.02562 * 17 15 14 26 26 H 1.08004 * 120.06878 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.6550 -4.2880 -1.0889 12 7 3.4910 -5.2164 -0.7251 13 6 3.6319 -5.2006 0.6252 14 6 4.3858 -5.9609 1.5236 15 6 4.3130 -5.6947 2.8736 16 9 5.0420 -6.4292 3.7421 17 6 3.4951 -4.6762 3.3481 18 6 2.7460 -3.9181 2.4743 19 6 2.8080 -4.1717 1.1110 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.3629 -4.0834 -2.1083 24 1 5.0264 -6.7510 1.1607 25 1 3.4469 -4.4768 4.4084 26 1 2.1120 -3.1283 2.8495 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075935161.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:19 Heat of formation + Delta-G solvation = 3.966675 kcal Electronic energy + Delta-G solvation = -13989.686606 eV Core-core repulsion = 11368.649105 eV Total energy + Delta-G solvation = -2621.037501 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.80949 -42.97579 -37.95789 -35.96436 -34.19952 -31.32621 -30.17520 -29.00824 -25.30245 -24.38139 -23.03484 -21.54483 -18.88574 -18.75437 -18.12272 -17.51244 -16.66882 -16.56025 -16.02966 -15.77217 -15.09320 -14.94356 -14.40677 -14.09044 -13.90492 -13.62269 -13.13239 -12.74826 -12.50640 -12.36294 -12.19329 -12.00339 -11.09237 -11.00063 -10.72878 -9.27893 -9.06096 -8.35825 -6.53188 -0.11277 0.38723 1.37891 1.40207 1.49719 1.84445 2.00707 2.34233 2.72323 2.96062 3.04479 3.50984 3.79070 4.01210 4.22066 4.35169 4.39430 4.58920 4.85287 4.91123 5.06822 5.16801 5.49030 5.53615 5.61858 5.78092 5.87868 6.24819 6.59687 6.89985 7.19651 8.70170 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.037280 B = 0.007774 C = 0.007051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.887974 B = 3601.041969 C = 3970.079724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.558 4.558 8 H 0.052 0.948 9 C 0.251 3.749 10 N -0.470 5.470 11 C 0.267 3.733 12 N -0.534 5.534 13 C 0.042 3.958 14 C -0.114 4.114 15 C 0.084 3.916 16 F -0.138 7.138 17 C -0.135 4.135 18 C -0.076 4.076 19 C 0.018 3.982 20 H 0.273 0.727 21 H 0.052 0.948 22 H 0.033 0.967 23 H 0.240 0.760 24 H 0.150 0.850 25 H 0.169 0.831 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -6.149 3.469 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.070 0.930 9 C 0.132 3.868 10 N -0.155 5.155 11 C -0.018 4.018 12 N -0.255 5.255 13 C -0.078 4.078 14 C -0.135 4.135 15 C 0.063 3.937 16 F -0.117 7.117 17 C -0.155 4.155 18 C -0.096 4.096 19 C -0.093 4.093 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.256 0.744 24 H 0.167 0.833 25 H 0.186 0.814 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.370 -6.481 2.955 8.356 hybrid contribution -0.179 1.428 0.411 1.497 sum 4.191 -5.053 3.366 7.377 Atomic orbital electron populations 1.69981 1.07218 1.28875 1.49215 1.25637 0.95655 1.02458 0.93607 0.85440 0.78400 0.78510 0.78700 1.19522 1.20123 1.19849 1.21453 0.93237 0.91049 1.53877 0.92980 1.19415 0.86764 0.81548 0.99082 1.46128 1.35916 1.28013 1.05403 1.25942 0.92295 0.88521 0.95058 1.70428 1.20973 1.23631 1.10498 1.18999 1.00095 0.97571 0.91129 1.20078 1.01587 1.01651 0.90168 1.17133 0.95993 0.94191 0.86404 1.91472 1.75700 1.75876 1.68648 1.20995 0.97494 0.95514 1.01541 1.20053 1.00491 1.00276 0.88792 1.19377 1.00413 0.98538 0.90994 0.91753 0.93009 0.94916 0.74353 0.83273 0.81386 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.42 13.29 21.45 0.28 -48.14 15 2 C 0.03 1.43 5.46 84.66 0.46 1.90 15 3 Si 0.96 40.55 29.54 68.60 2.03 42.57 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 5 H -0.28 -11.26 7.11 99.48 0.71 -10.55 15 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 7 C -0.56 -28.41 9.39 25.60 0.24 -28.17 15 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 15 9 C 0.25 11.63 5.91 85.63 0.51 12.14 15 10 N -0.47 -19.58 2.79 -524.29 -1.46 -21.04 15 11 C 0.27 9.90 12.49 180.06 2.25 12.15 15 12 N -0.53 -20.90 11.27 -192.05 -2.16 -23.06 15 13 C 0.04 1.64 7.23 39.45 0.29 1.93 15 14 C -0.11 -3.79 10.07 22.53 0.23 -3.56 15 15 C 0.08 2.57 7.28 22.34 0.16 2.73 15 16 F -0.14 -3.91 17.26 44.97 0.78 -3.13 15 17 C -0.14 -3.96 10.00 22.35 0.22 -3.74 15 18 C -0.08 -2.66 10.04 22.31 0.22 -2.44 15 19 C 0.02 0.73 6.87 38.83 0.27 1.00 15 20 H 0.27 13.63 8.31 -92.71 -0.77 12.86 15 21 H 0.05 2.40 8.13 -2.39 -0.02 2.38 15 22 H 0.03 1.60 8.14 -2.38 -0.02 1.58 15 23 H 0.24 6.81 8.06 -2.91 -0.02 6.79 15 24 H 0.15 4.34 8.06 -2.91 -0.02 4.32 15 25 H 0.17 3.75 8.06 -2.91 -0.02 3.73 15 26 H 0.13 4.66 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -57.05 244.83 5.50 -51.55 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.19 Total: 7.31 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.85 Total: -6.07 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -3.34 Total: -92.24 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -57.05 5.50 -51.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075935161.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.517 kcal (2) G-P(sol) polarization free energy of solvation -57.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds