Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 N 1.39873 * 125.46841 * 90.02309 * 10 9 7 12 12 C 1.30245 * 110.08426 * 179.97438 * 11 10 9 13 13 C 1.45925 * 107.79892 * 359.97438 * 12 11 10 14 14 C 1.39969 * 134.00290 * 180.02562 * 13 12 11 15 15 C 1.36650 * 119.61657 * 179.30474 * 14 13 12 16 16 F 1.35094 * 119.71241 * 180.21254 * 15 14 13 17 17 C 1.39150 * 120.57484 * 0.59327 * 15 14 13 18 18 C 1.36574 * 120.79351 * 359.61736 * 17 15 14 19 19 C 1.37117 * 125.46817 * 269.71884 * 10 9 7 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 23 23 H 1.08001 * 126.10329 * 180.02562 * 12 11 10 24 24 H 1.07998 * 120.19275 * 359.97438 * 14 13 12 25 25 H 1.07999 * 119.60287 * 179.59742 * 17 15 14 26 26 H 1.07997 * 120.06029 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 7 2.7301 -4.2299 1.1397 12 6 3.5458 -5.1847 0.7942 13 6 3.5854 -5.2317 -0.6638 14 6 4.2649 -6.0281 -1.5929 15 6 4.0697 -5.8222 -2.9296 16 9 4.7212 -6.5925 -3.8279 17 6 3.2116 -4.8207 -3.3735 18 6 2.5418 -4.0291 -2.4847 19 6 2.7159 -4.2210 -1.1162 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 4.0943 -5.8276 1.4667 24 1 4.9314 -6.8080 -1.2552 25 1 3.0740 -4.6674 -4.4337 26 1 1.8784 -3.2556 -2.8424 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075937395.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = 17.826693 kcal Electronic energy + Delta-G solvation = -13948.569511 eV Core-core repulsion = 11328.133026 eV Total energy + Delta-G solvation = -2620.436485 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.71545 -42.10002 -37.88596 -35.72010 -33.77913 -31.40421 -30.52541 -28.59183 -25.25237 -24.28910 -22.87450 -21.52496 -18.85353 -18.58836 -18.10060 -17.27426 -16.62489 -16.51545 -15.82322 -15.57405 -15.25834 -14.52491 -14.33327 -14.12276 -13.95681 -13.46810 -13.03926 -12.73384 -12.48340 -12.34752 -12.06356 -11.87628 -11.64064 -10.85089 -10.76575 -9.71662 -8.77552 -8.31702 -6.53867 -0.06895 0.40895 1.35164 1.36010 1.47904 1.62802 1.69769 2.31902 2.68281 2.93791 3.28909 3.56669 3.79909 3.93299 4.08825 4.33196 4.66090 4.72656 4.83644 4.89638 5.03292 5.18720 5.24949 5.49747 5.62716 5.78604 5.92081 6.12782 6.56887 6.84337 7.17652 8.70582 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.037347 B = 0.007680 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.551535 B = 3645.149374 C = 3992.828268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.049 0.951 9 C 0.279 3.721 10 N -0.390 5.390 11 N -0.288 5.288 12 C 0.068 3.932 13 C -0.183 4.183 14 C -0.063 4.063 15 C 0.039 3.961 16 F -0.143 7.143 17 C -0.096 4.096 18 C -0.119 4.119 19 C 0.098 3.902 20 H 0.274 0.726 21 H 0.040 0.960 22 H 0.025 0.975 23 H 0.240 0.760 24 H 0.171 0.829 25 H 0.164 0.836 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -10.039 -4.793 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.593 4.593 8 H 0.067 0.933 9 C 0.160 3.840 10 N -0.177 5.177 11 N -0.101 5.101 12 C -0.128 4.128 13 C -0.192 4.192 14 C -0.084 4.084 15 C 0.018 3.982 16 F -0.122 7.122 17 C -0.117 4.117 18 C -0.141 4.141 19 C -0.020 4.020 20 H 0.083 0.917 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.256 0.744 24 H 0.188 0.812 25 H 0.182 0.818 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.530 -9.162 -3.799 11.875 hybrid contribution 0.346 0.619 -0.617 0.940 sum 6.876 -8.543 -4.416 11.822 Atomic orbital electron populations 1.70012 1.07350 1.28847 1.49537 1.25762 0.95815 1.02759 0.93590 0.85290 0.78403 0.78225 0.78460 1.19770 1.19271 1.19800 1.21520 0.93139 0.91216 1.53470 0.93299 1.19118 0.86091 0.81046 0.97717 1.49017 1.38638 1.29223 1.00774 1.76534 1.12715 1.09555 1.11328 1.25736 0.97573 0.96649 0.92835 1.19912 1.04003 1.00946 0.94328 1.20390 0.98938 0.99281 0.89799 1.17016 0.99207 0.95246 0.86703 1.91465 1.79843 1.73844 1.67041 1.20840 0.95551 0.93936 1.01415 1.19871 1.03384 1.02172 0.88708 1.19440 0.96880 0.95052 0.90590 0.91710 0.94204 0.95650 0.74375 0.81188 0.81804 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.31 13.29 21.45 0.28 -52.03 15 2 C 0.02 1.19 5.46 84.65 0.46 1.65 15 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 15 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.56 -31.37 9.39 25.60 0.24 -31.13 15 8 H 0.05 2.85 7.81 -2.91 -0.02 2.82 15 9 C 0.28 14.90 6.12 85.63 0.52 15.42 15 10 N -0.39 -18.43 3.63 -343.29 -1.25 -19.67 15 11 N -0.29 -12.42 12.40 -53.09 -0.66 -13.08 15 12 C 0.07 2.19 12.28 86.92 1.07 3.25 15 13 C -0.18 -6.14 6.36 -20.24 -0.13 -6.26 15 14 C -0.06 -1.68 10.03 22.32 0.22 -1.45 15 15 C 0.04 1.07 7.24 22.12 0.16 1.23 15 16 F -0.14 -3.67 17.25 44.97 0.78 -2.90 15 17 C -0.10 -2.72 9.94 22.10 0.22 -2.50 15 18 C -0.12 -4.22 9.96 22.13 0.22 -4.00 15 19 C 0.10 3.98 6.87 39.19 0.27 4.25 15 20 H 0.27 14.47 8.31 -92.71 -0.77 13.70 15 21 H 0.04 2.15 8.13 -2.39 -0.02 2.13 15 22 H 0.03 1.45 8.14 -2.38 -0.02 1.44 15 23 H 0.24 4.83 8.06 -2.91 -0.02 4.80 15 24 H 0.17 3.19 8.06 -2.91 -0.02 3.16 15 25 H 0.16 3.57 8.06 -2.91 -0.02 3.54 15 26 H 0.13 4.66 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -64.43 245.71 5.63 -58.80 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.19 Total: 3.21 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.26 Total: -19.55 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.62 Total: -84.78 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.43 5.63 -58.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075937395.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.624 kcal (2) G-P(sol) polarization free energy of solvation -64.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds