Wall clock time and date at job start Mon Mar 30 2020 02:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30096 * 124.98672 * 2 1 4 4 C 1.35895 * 109.74419 * 180.02562 * 3 2 1 5 5 C 1.39734 * 133.47854 * 180.02562 * 4 3 2 6 6 C 1.37709 * 119.81925 * 180.25208 * 5 4 3 7 7 C 1.38706 * 120.54079 * 359.44174 * 6 5 4 8 8 C 1.38182 * 120.40795 * 0.56168 * 7 6 5 9 9 F 1.35094 * 120.10610 * 179.69970 * 8 7 6 10 10 C 1.38913 * 119.78257 * 359.72356 * 8 7 6 11 11 N 1.36512 * 124.98649 * 180.02562 * 2 1 3 12 12 C 1.37288 * 126.40092 * 359.97418 * 11 2 1 13 13 H 1.08002 * 119.99378 * 136.57484 * 12 11 2 14 14 C 1.38901 * 120.00262 * 316.57116 * 12 11 2 15 15 N 1.31391 * 119.99949 * 342.37717 * 14 12 11 16 16 Si 1.86802 * 119.99931 * 162.37597 * 14 12 11 17 17 H 1.48494 * 109.47477 * 60.00031 * 16 14 12 18 18 H 1.48506 * 109.46976 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47030 * 299.99961 * 16 14 12 20 20 H 1.09005 * 109.47095 * 275.54192 * 1 2 3 21 21 H 1.09000 * 109.47664 * 35.54502 * 1 2 3 22 22 H 1.08998 * 109.47082 * 155.55150 * 1 2 3 23 23 H 1.07994 * 120.08666 * 359.97325 * 5 4 3 24 24 H 1.08006 * 119.72525 * 179.72113 * 6 5 4 25 25 H 1.08003 * 119.79208 * 180.25780 * 7 6 5 26 26 H 0.96999 * 119.99812 * 185.07231 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2529 1.0659 0.0000 4 6 3.5640 0.7086 -0.0006 5 6 4.7583 1.4341 -0.0004 6 6 5.9639 0.7685 -0.0064 7 6 6.0036 -0.6179 -0.0010 8 6 4.8323 -1.3512 -0.0012 9 9 4.8782 -2.7014 -0.0021 10 6 3.6077 -0.6954 -0.0010 11 7 2.2897 -1.1184 -0.0005 12 6 1.8515 -2.4195 -0.0006 13 1 2.3228 -3.1479 -0.6439 14 6 0.8023 -2.7991 0.8267 15 7 0.4572 -2.0386 1.8410 16 14 -0.1183 -4.3908 0.4970 17 1 0.8272 -5.5336 0.5695 18 1 -1.1855 -4.5653 1.5148 19 1 -0.7287 -4.3385 -0.8557 20 1 -0.3633 0.0993 1.0229 21 1 -0.3634 0.8361 -0.5974 22 1 -0.3633 -0.9355 -0.4253 23 1 4.7358 2.5138 -0.0001 24 1 6.8860 1.3308 -0.0108 25 1 6.9558 -1.1275 -0.0016 26 1 -0.2255 -2.3381 2.4615 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075972662.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:58 Heat of formation + Delta-G solvation = 13.709125 kcal Electronic energy + Delta-G solvation = -14639.706276 eV Core-core repulsion = 12019.091240 eV Total energy + Delta-G solvation = -2620.615036 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.94147 -40.83723 -36.41261 -33.92165 -31.64863 -30.04642 -28.84894 -26.67371 -25.25006 -21.43974 -21.15337 -20.05080 -17.73334 -16.70299 -15.74987 -15.21491 -15.05009 -14.77650 -14.33318 -13.86810 -13.70423 -12.61747 -12.06822 -11.93984 -11.92727 -11.78402 -11.52241 -11.14338 -11.07468 -10.84722 -10.63113 -10.30623 -9.55467 -8.93899 -8.88888 -7.28367 -7.11522 -6.86778 -4.65509 1.78650 2.38877 2.94846 2.98446 3.01015 3.70347 3.89422 4.42412 4.57003 4.71774 5.19535 5.26448 5.64598 5.83086 6.05568 6.23269 6.37838 6.52180 6.62018 6.63708 6.80490 6.94649 7.05602 7.15825 7.37590 7.58538 7.84701 8.10792 8.48403 9.12557 9.26104 10.15186 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.034674 B = 0.012068 C = 0.009396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.321679 B = 2319.563344 C = 2979.334262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.274 3.726 3 N -0.538 5.538 4 C 0.062 3.938 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.183 4.183 8 C 0.130 3.870 9 F -0.144 7.144 10 C -0.028 4.028 11 N -0.282 5.282 12 C -0.357 4.357 13 H 0.107 0.893 14 C 0.059 3.941 15 N -0.832 5.832 16 Si 0.934 3.066 17 H -0.265 1.265 18 H -0.276 1.276 19 H -0.263 1.263 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.118 0.882 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 0.520 -2.274 3.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.012 3.988 3 N -0.261 5.261 4 C -0.064 4.064 5 C -0.110 4.110 6 C -0.145 4.145 7 C -0.204 4.204 8 C 0.108 3.892 9 F -0.123 7.123 10 C -0.144 4.144 11 N 0.048 4.952 12 C -0.485 4.485 13 H 0.124 0.876 14 C -0.153 4.153 15 N -0.461 5.461 16 Si 0.758 3.242 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.188 1.188 20 H 0.102 0.898 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.136 0.864 24 H 0.139 0.861 25 H 0.142 0.858 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.710 1.145 -2.116 2.951 hybrid contribution -0.037 -1.939 0.161 1.946 sum 1.673 -0.794 -1.955 2.692 Atomic orbital electron populations 1.20048 0.85874 1.01468 1.02992 1.23304 0.95265 0.80853 0.99372 1.70307 1.00023 1.27937 1.27864 1.18816 0.92487 0.89324 1.05749 1.20025 0.89388 0.98723 1.02868 1.20333 0.96847 0.92916 1.04446 1.20486 0.95346 0.94495 1.10117 1.16663 0.91583 0.76008 1.04931 1.91421 1.97265 1.29616 1.94003 1.19167 0.86665 0.95483 1.13049 1.41233 1.01467 1.06630 1.45825 1.19690 1.18076 0.84418 1.26306 0.87584 1.25653 0.96629 0.99750 0.93305 1.69951 1.28428 1.37641 1.10104 0.85871 0.79060 0.80245 0.79060 1.18995 1.20035 1.18773 0.89752 0.91979 0.91162 0.86384 0.86067 0.85830 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 8.68 36.00 0.31 -0.68 15 2 C 0.27 7.04 7.28 -154.39 -1.12 5.92 15 3 N -0.54 -13.87 11.27 -8.12 -0.09 -13.96 15 4 C 0.06 1.54 7.22 -84.67 -0.61 0.93 15 5 C -0.09 -1.83 10.10 -39.22 -0.40 -2.22 15 6 C -0.12 -2.21 10.01 -39.60 -0.40 -2.61 15 7 C -0.18 -3.52 10.01 -39.43 -0.39 -3.92 15 8 C 0.13 3.03 7.31 -39.35 -0.29 2.74 15 9 F -0.14 -3.41 16.78 2.25 0.04 -3.38 15 10 C -0.03 -0.73 6.82 -83.79 -0.57 -1.30 15 11 N -0.28 -7.61 2.79 -56.61 -0.16 -7.76 15 12 C -0.36 -9.40 9.12 -14.86 -0.14 -9.53 15 13 H 0.11 2.76 7.89 -52.49 -0.41 2.34 15 14 C 0.06 1.45 4.00 -17.49 -0.07 1.38 15 15 N -0.83 -21.10 11.11 55.49 0.62 -20.49 15 16 Si 0.93 18.55 29.59 -169.99 -5.03 13.52 15 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 18 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 20 H 0.08 1.86 7.43 -51.93 -0.39 1.47 15 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 22 H 0.07 1.51 6.83 -51.93 -0.35 1.16 15 23 H 0.12 2.09 8.06 -52.49 -0.42 1.67 15 24 H 0.12 1.67 8.06 -52.48 -0.42 1.25 15 25 H 0.12 1.98 8.06 -52.48 -0.42 1.56 15 26 H 0.28 6.62 8.32 -40.82 -0.34 6.28 15 LS Contribution 236.19 15.07 3.56 3.56 Total: -1.00 -29.09 236.19 -6.72 -35.81 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -1.98 Total: 1.99 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.68 Total: -9.29 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.37 Total: -42.21 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.09 -6.72 -35.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972662.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.522 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds