Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37911 * 126.54071 * 2 1 4 4 C 1.40105 * 125.30768 * 359.95832 * 3 2 1 5 5 H 1.08002 * 120.00452 * 359.72551 * 4 3 2 6 6 C 1.40337 * 120.00028 * 179.44358 * 4 3 2 7 7 N 1.30604 * 119.99358 * 0.27907 * 6 4 3 8 8 Si 1.86789 * 120.00343 * 180.27750 * 6 4 3 9 9 H 1.48496 * 109.47436 * 59.99958 * 8 6 4 10 10 H 1.48498 * 109.47440 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46930 * 300.00136 * 8 6 4 12 12 N 1.32489 * 109.37970 * 179.69359 * 3 2 1 13 13 C 1.33942 * 109.80558 * 0.26685 * 12 3 2 14 14 C 1.40591 * 133.15268 * 180.02562 * 13 12 3 15 15 C 1.36286 * 119.88179 * 180.02562 * 14 13 12 16 16 C 1.39320 * 120.72852 * 359.95404 * 15 14 13 17 17 F 1.35104 * 119.74502 * 180.02562 * 16 15 14 18 18 C 1.38243 * 120.50956 * 0.02653 * 16 15 14 19 19 C 1.37997 * 126.54853 * 180.13882 * 2 1 3 20 20 H 1.09006 * 109.46586 * 90.02683 * 1 2 3 21 21 H 1.08995 * 109.46771 * 210.02647 * 1 2 3 22 22 H 1.08997 * 109.47128 * 330.03116 * 1 2 3 23 23 H 0.97005 * 119.99549 * 179.97438 * 7 6 4 24 24 H 1.08003 * 120.05631 * 359.94641 * 14 13 12 25 25 H 1.08006 * 119.63437 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.12417 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2862 1.1080 0.0000 4 6 1.8497 2.4393 -0.0008 5 1 0.7927 2.6612 -0.0060 6 6 2.7859 3.4847 0.0111 7 7 4.0641 3.2164 0.0174 8 14 2.2040 5.2597 0.0178 9 1 1.3771 5.5050 1.2266 10 1 3.3801 6.1662 0.0297 11 1 1.3921 5.5190 -1.1983 12 7 3.5521 0.7171 0.0067 13 6 3.6139 -0.6209 0.0053 14 6 4.6828 -1.5341 0.0107 15 6 4.4315 -2.8736 0.0069 16 6 3.1232 -3.3524 -0.0013 17 9 2.8969 -4.6844 -0.0044 18 6 2.0548 -2.4752 -0.0063 19 6 2.2868 -1.1086 -0.0027 20 1 -0.3633 -0.0005 -1.0278 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5133 23 1 4.7112 3.9390 0.0253 24 1 5.7013 -1.1747 0.0165 25 1 5.2557 -3.5716 0.0106 26 1 1.0431 -2.8532 -0.0131 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973548.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = 16.071916 kcal Electronic energy + Delta-G solvation = -14185.522226 eV Core-core repulsion = 11565.009648 eV Total energy + Delta-G solvation = -2620.512578 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.94669 -40.44756 -35.96107 -33.71209 -32.63255 -29.73003 -28.51458 -25.89662 -25.76921 -21.70835 -20.89744 -19.77636 -17.16416 -16.80796 -16.14617 -15.21100 -14.86359 -14.84636 -14.30590 -13.98677 -13.42250 -13.00210 -12.26964 -12.23148 -12.07676 -11.90059 -11.42574 -11.41374 -10.78785 -10.45873 -10.39315 -10.33649 -9.44842 -9.08168 -8.06811 -7.40389 -6.95701 -6.77941 -4.72795 1.99259 2.45219 2.93794 2.96889 2.99163 3.70139 3.96745 3.97419 4.76639 5.26249 5.36093 5.48440 5.51958 5.69230 5.87009 6.00706 6.16534 6.25474 6.45900 6.77282 6.84340 6.93988 7.20313 7.31779 7.58633 7.73303 7.83139 8.14858 8.50871 8.87163 9.79727 10.10703 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.053572 B = 0.008134 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.538237 B = 3441.519824 C = 3948.906122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.543 5.543 3 C 0.418 3.582 4 C -0.435 4.435 5 H 0.089 0.911 6 C 0.075 3.925 7 N -0.713 5.713 8 Si 0.922 3.078 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.263 1.263 12 N -0.532 5.532 13 C 0.107 3.893 14 C -0.106 4.106 15 C -0.146 4.146 16 C 0.021 3.979 17 F -0.161 7.161 18 C -0.132 4.132 19 C 0.015 3.985 20 H 0.052 0.948 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.282 0.718 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 -2.094 0.082 4.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.239 5.239 3 C 0.183 3.817 4 C -0.472 4.472 5 H 0.107 0.893 6 C -0.153 4.153 7 N -0.334 5.334 8 Si 0.745 3.255 9 H -0.188 1.188 10 H -0.199 1.199 11 H -0.188 1.188 12 N -0.255 5.255 13 C -0.022 4.022 14 C -0.127 4.127 15 C -0.168 4.168 16 C -0.001 4.001 17 F -0.140 7.140 18 C -0.155 4.155 19 C -0.093 4.093 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.138 0.862 25 H 0.136 0.864 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.100 -1.467 0.092 3.431 hybrid contribution -1.140 -0.060 -0.015 1.141 sum -4.240 -1.527 0.077 4.507 Atomic orbital electron populations 1.21476 0.78889 1.02498 1.01303 1.45444 1.05264 1.05268 1.67954 1.20477 0.83209 0.87418 0.90608 1.18507 0.94873 0.86704 1.47113 0.89282 1.25898 0.94385 1.01530 0.93458 1.69964 1.01562 1.34712 1.27163 0.86152 0.79279 0.80127 0.79955 1.18775 1.19891 1.18768 1.71393 1.15967 1.05731 1.32448 1.19637 0.90751 0.92816 0.98995 1.19599 0.97272 0.90424 1.05437 1.20193 0.94300 0.95691 1.06575 1.16869 0.93428 0.76073 1.13684 1.91348 1.95666 1.31688 1.95278 1.19356 0.97415 0.89956 1.08795 1.18487 0.92797 0.88136 1.09903 0.92965 0.92000 0.90430 0.90682 0.86195 0.86421 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.93 59.85 0.65 2.44 15 2 N -0.54 -12.68 3.26 -120.85 -0.39 -13.08 15 3 C 0.42 11.07 7.41 -155.63 -1.15 9.92 15 4 C -0.43 -10.81 8.99 -38.09 -0.34 -11.15 15 5 H 0.09 1.98 7.10 -52.49 -0.37 1.60 15 6 C 0.08 1.81 5.50 -17.28 -0.10 1.71 15 7 N -0.71 -18.38 11.85 55.57 0.66 -17.72 15 8 Si 0.92 17.29 29.56 -169.99 -5.03 12.27 15 9 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 10 H -0.27 -5.06 7.11 56.52 0.40 -4.65 15 11 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 12 N -0.53 -14.99 9.32 -10.29 -0.10 -15.08 15 13 C 0.11 2.74 7.21 -84.86 -0.61 2.13 15 14 C -0.11 -2.36 10.07 -39.40 -0.40 -2.76 15 15 C -0.15 -2.93 9.94 -39.88 -0.40 -3.33 15 16 C 0.02 0.43 7.31 -39.18 -0.29 0.15 15 17 F -0.16 -3.13 17.26 2.25 0.04 -3.09 15 18 C -0.13 -2.81 10.02 -39.44 -0.40 -3.20 15 19 C 0.02 0.37 6.88 -83.75 -0.58 -0.21 15 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.08 1.25 7.32 -51.93 -0.38 0.87 15 23 H 0.28 6.54 8.29 -40.82 -0.34 6.20 15 24 H 0.12 2.48 8.06 -52.48 -0.42 2.05 15 25 H 0.12 1.99 8.06 -52.48 -0.42 1.56 15 26 H 0.11 2.04 8.06 -52.48 -0.42 1.62 15 LS Contribution 240.00 15.07 3.62 3.62 Total: -1.00 -29.26 240.00 -6.80 -36.06 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -2.00 Total: 1.32 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.60 Total: -4.29 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.17 Total: -45.88 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.26 -6.80 -36.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973548.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.129 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds