Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37911 * 126.54071 * 2 1 4 4 C 1.40105 * 125.30768 * 359.95832 * 3 2 1 5 5 H 1.08002 * 120.00452 * 359.72551 * 4 3 2 6 6 C 1.40337 * 120.00028 * 179.44358 * 4 3 2 7 7 N 1.30604 * 119.99358 * 0.27907 * 6 4 3 8 8 Si 1.86789 * 120.00343 * 180.27750 * 6 4 3 9 9 H 1.48496 * 109.47436 * 59.99958 * 8 6 4 10 10 H 1.48498 * 109.47440 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46930 * 300.00136 * 8 6 4 12 12 N 1.32489 * 109.37970 * 179.69359 * 3 2 1 13 13 C 1.33942 * 109.80558 * 0.26685 * 12 3 2 14 14 C 1.40591 * 133.15268 * 180.02562 * 13 12 3 15 15 C 1.36286 * 119.88179 * 180.02562 * 14 13 12 16 16 C 1.39320 * 120.72852 * 359.95404 * 15 14 13 17 17 F 1.35104 * 119.74502 * 180.02562 * 16 15 14 18 18 C 1.38243 * 120.50956 * 0.02653 * 16 15 14 19 19 C 1.37997 * 126.54853 * 180.13882 * 2 1 3 20 20 H 1.09006 * 109.46586 * 90.02683 * 1 2 3 21 21 H 1.08995 * 109.46771 * 210.02647 * 1 2 3 22 22 H 1.08997 * 109.47128 * 330.03116 * 1 2 3 23 23 H 0.97005 * 119.99549 * 179.97438 * 7 6 4 24 24 H 1.08003 * 120.05631 * 359.94641 * 14 13 12 25 25 H 1.08006 * 119.63437 * 179.97438 * 15 14 13 26 26 H 1.08005 * 120.12417 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2862 1.1080 0.0000 4 6 1.8497 2.4393 -0.0008 5 1 0.7927 2.6612 -0.0060 6 6 2.7859 3.4847 0.0111 7 7 4.0641 3.2164 0.0174 8 14 2.2040 5.2597 0.0178 9 1 1.3771 5.5050 1.2266 10 1 3.3801 6.1662 0.0297 11 1 1.3921 5.5190 -1.1983 12 7 3.5521 0.7171 0.0067 13 6 3.6139 -0.6209 0.0053 14 6 4.6828 -1.5341 0.0107 15 6 4.4315 -2.8736 0.0069 16 6 3.1232 -3.3524 -0.0013 17 9 2.8969 -4.6844 -0.0044 18 6 2.0548 -2.4752 -0.0063 19 6 2.2868 -1.1086 -0.0027 20 1 -0.3633 -0.0005 -1.0278 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5133 23 1 4.7112 3.9390 0.0253 24 1 5.7013 -1.1747 0.0165 25 1 5.2557 -3.5716 0.0106 26 1 1.0431 -2.8532 -0.0131 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075973548.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -0.562218 kcal Electronic energy + Delta-G solvation = -14186.243536 eV Core-core repulsion = 11565.009648 eV Total energy + Delta-G solvation = -2621.233888 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.57299 -42.21451 -37.67154 -35.47163 -34.37080 -31.41608 -30.29626 -27.58588 -27.42772 -23.45562 -22.62950 -21.53506 -18.94403 -18.49474 -17.85115 -16.89745 -16.50372 -16.49376 -15.92953 -15.60802 -15.02502 -14.69867 -13.88633 -13.79313 -13.75234 -13.44726 -12.99574 -12.95983 -12.51042 -12.05523 -11.99026 -11.98044 -11.12541 -10.85470 -9.93914 -9.15744 -8.73113 -8.53856 -6.59528 0.25060 0.74657 1.43606 1.46878 1.58356 2.12478 2.22190 2.35171 3.00548 3.51328 3.59567 3.80288 4.07787 4.17855 4.44260 4.52982 4.59493 4.69573 4.75680 5.07960 5.10351 5.25728 5.48210 5.55842 5.83491 6.05677 6.06369 6.38555 6.71020 7.09272 7.95937 8.38342 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.053572 B = 0.008134 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.538237 B = 3441.519824 C = 3948.906122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.547 5.547 3 C 0.388 3.612 4 C -0.460 4.460 5 H 0.109 0.891 6 C 0.030 3.970 7 N -0.763 5.763 8 Si 1.004 2.996 9 H -0.253 1.253 10 H -0.272 1.272 11 H -0.254 1.254 12 N -0.579 5.579 13 C 0.058 3.942 14 C -0.113 4.113 15 C -0.137 4.137 16 C 0.030 3.970 17 F -0.149 7.149 18 C -0.132 4.132 19 C 0.001 3.999 20 H 0.067 0.933 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.286 0.714 24 H 0.127 0.873 25 H 0.155 0.845 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -2.621 0.095 5.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.242 5.242 3 C 0.152 3.848 4 C -0.497 4.497 5 H 0.126 0.874 6 C -0.193 4.193 7 N -0.386 5.386 8 Si 0.823 3.177 9 H -0.177 1.177 10 H -0.196 1.196 11 H -0.178 1.178 12 N -0.303 5.303 13 C -0.069 4.069 14 C -0.134 4.134 15 C -0.158 4.158 16 C 0.008 3.992 17 F -0.128 7.128 18 C -0.154 4.154 19 C -0.109 4.109 20 H 0.086 0.914 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.145 0.855 25 H 0.172 0.828 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.381 -2.050 0.104 4.837 hybrid contribution -0.731 -0.119 -0.021 0.741 sum -5.111 -2.169 0.083 5.553 Atomic orbital electron populations 1.21807 0.75850 1.04241 1.02838 1.45660 1.07099 1.04270 1.67197 1.20872 0.83679 0.88771 0.91525 1.19020 0.96158 0.86746 1.47815 0.87351 1.27020 0.94095 1.06221 0.92013 1.70099 1.03209 1.36455 1.28855 0.84929 0.78762 0.73596 0.80417 1.17728 1.19612 1.17776 1.71264 1.17756 1.07374 1.33950 1.20185 0.92873 0.92759 1.01089 1.19841 0.97101 0.91092 1.05375 1.20506 0.95384 0.95222 1.04646 1.17005 0.93590 0.76490 1.12073 1.91385 1.95618 1.30764 1.95054 1.19602 0.99067 0.88864 1.07893 1.18764 0.92381 0.89242 1.10471 0.91428 0.89578 0.89410 0.90318 0.85532 0.82778 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.15 10.93 127.77 1.40 4.55 15 2 N -0.55 -25.50 3.26 -536.27 -1.75 -27.24 15 3 C 0.39 21.10 7.41 133.64 0.99 22.09 15 4 C -0.46 -23.19 8.99 23.23 0.21 -22.98 15 5 H 0.11 4.77 7.10 -2.91 -0.02 4.75 15 6 C 0.03 1.45 5.50 85.39 0.47 1.92 15 7 N -0.76 -40.80 11.85 21.89 0.26 -40.54 15 8 Si 1.00 35.29 29.56 68.60 2.03 37.31 15 9 H -0.25 -8.41 7.11 99.48 0.71 -7.71 15 10 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 11 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 12 N -0.58 -33.86 9.32 -186.46 -1.74 -35.60 15 13 C 0.06 3.05 7.21 40.17 0.29 3.34 15 14 C -0.11 -5.02 10.07 22.39 0.23 -4.79 15 15 C -0.14 -5.17 9.94 22.07 0.22 -4.95 15 16 C 0.03 1.16 7.31 22.53 0.16 1.32 15 17 F -0.15 -5.29 17.26 44.97 0.78 -4.51 15 18 C -0.13 -5.32 10.02 22.36 0.22 -5.10 15 19 C 0.00 0.02 6.88 39.04 0.27 0.29 15 20 H 0.07 2.03 8.14 -2.38 -0.02 2.01 15 21 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.09 2.71 7.32 -2.39 -0.02 2.69 15 23 H 0.29 13.78 8.29 -92.70 -0.77 13.01 15 24 H 0.13 5.29 8.06 -2.91 -0.02 5.27 15 25 H 0.15 4.65 8.06 -2.91 -0.02 4.63 15 26 H 0.14 4.66 8.06 -2.91 -0.02 4.64 15 Total: -1.00 -64.77 240.00 5.24 -59.53 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.20 Total: 15.35 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.46 Total: -4.31 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -3.23 Total: -103.38 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.31 kcal Total: -64.77 5.24 -59.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973548.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.970 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds