Wall clock time and date at job start Mon Mar 30 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29587 * 118.71510 * 2 1 4 4 N 1.39705 * 121.18218 * 179.73773 * 3 2 1 5 5 C 1.36902 * 134.20051 * 180.19429 * 4 3 2 6 6 C 1.39631 * 125.68002 * 0.32257 * 5 4 3 7 7 H 1.08003 * 119.99408 * 359.97438 * 6 5 4 8 8 C 1.40399 * 120.00363 * 179.97438 * 6 5 4 9 9 N 1.30596 * 119.99763 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00206 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46930 * 90.00282 * 10 8 6 12 12 H 1.48503 * 109.47148 * 209.99948 * 10 8 6 13 13 H 1.48495 * 109.47407 * 330.00126 * 10 8 6 14 14 N 1.33650 * 108.63991 * 180.29925 * 5 4 3 15 15 C 1.32164 * 109.72204 * 0.02562 * 14 5 4 16 16 C 1.37735 * 119.11447 * 0.52295 * 4 3 2 17 17 C 1.46248 * 118.43284 * 359.75358 * 16 4 3 18 18 O 1.21774 * 120.92576 * 180.02562 * 17 16 4 19 19 N 1.35210 * 118.15129 * 359.97438 * 17 16 4 20 20 H 0.96997 * 119.72161 * 180.02562 * 19 17 16 21 21 H 1.09001 * 109.46953 * 269.72990 * 1 2 3 22 22 H 1.09000 * 109.47318 * 29.72588 * 1 2 3 23 23 H 1.09000 * 109.47161 * 149.73219 * 1 2 3 24 24 H 0.97003 * 120.00349 * 180.02562 * 9 8 6 25 25 H 1.07996 * 125.97175 * 180.02562 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1297 1.1365 0.0000 4 7 3.5254 1.1966 0.0055 5 6 4.4367 2.2183 0.0102 6 6 4.1324 3.5810 0.0170 7 1 3.1018 3.9041 0.0186 8 6 5.1660 4.5312 0.0219 9 7 6.4122 4.1404 0.0206 10 14 4.7589 6.3542 0.0303 11 1 4.6505 6.8307 1.4327 12 1 5.8347 7.1049 -0.6657 13 1 3.4680 6.5764 -0.6691 14 7 5.6661 1.6941 0.0077 15 6 5.5884 0.3747 0.0010 16 6 4.2468 0.0233 0.0000 17 6 3.5159 -1.2434 -0.0059 18 8 4.1079 -2.3075 -0.0104 19 7 2.1645 -1.2002 -0.0051 20 1 1.6569 -2.0267 -0.0086 21 1 -0.3633 -0.0048 1.0277 22 1 -0.3634 0.8924 -0.5096 23 1 -0.3633 -0.8876 -0.5180 24 1 7.1264 4.7968 0.0244 25 1 6.4236 -0.3099 -0.0019 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082397463.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:45 Heat of formation + Delta-G solvation = 35.740571 kcal Electronic energy + Delta-G solvation = -14381.141755 eV Core-core repulsion = 11781.402035 eV Total energy + Delta-G solvation = -2599.739720 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.68600 -40.50811 -38.51268 -35.62673 -34.51221 -32.58602 -31.15604 -29.06301 -27.66338 -24.44560 -23.36298 -22.11106 -20.36628 -19.31285 -18.63074 -17.80026 -17.11146 -16.75380 -15.63982 -15.36961 -15.13800 -14.70723 -14.63115 -14.48650 -13.43525 -13.29171 -12.95988 -12.69531 -12.66598 -12.00811 -11.72782 -11.55884 -11.54617 -11.22204 -10.46714 -9.74131 -9.37875 -8.62294 -6.61137 0.43111 0.61682 1.39682 1.47447 1.48420 1.61780 1.92056 2.23188 2.26707 2.58391 3.31723 3.32969 4.01661 4.09120 4.28590 4.64209 4.73767 4.78565 5.07666 5.13122 5.27247 5.65699 5.71022 5.77625 6.09738 6.36186 6.66156 6.86698 7.45111 7.67291 8.32290 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.009520 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.481159 B = 2940.331024 C = 3653.667325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.330 3.670 3 N -0.325 5.325 4 N -0.363 5.363 5 C 0.392 3.608 6 C -0.449 4.449 7 H 0.098 0.902 8 C 0.031 3.969 9 N -0.762 5.762 10 Si 1.009 2.991 11 H -0.258 1.258 12 H -0.263 1.263 13 H -0.252 1.252 14 N -0.526 5.526 15 C 0.102 3.898 16 C -0.297 4.297 17 C 0.598 3.402 18 O -0.562 6.562 19 N -0.663 5.663 20 H 0.432 0.568 21 H 0.116 0.884 22 H 0.103 0.897 23 H 0.124 0.876 24 H 0.292 0.708 25 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 -1.863 0.004 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.143 5.143 4 N -0.144 5.144 5 C 0.158 3.842 6 C -0.487 4.487 7 H 0.116 0.884 8 C -0.192 4.192 9 N -0.385 5.385 10 Si 0.827 3.173 11 H -0.182 1.182 12 H -0.187 1.187 13 H -0.176 1.176 14 N -0.249 5.249 15 C -0.064 4.064 16 C -0.407 4.407 17 C 0.393 3.607 18 O -0.441 6.441 19 N -0.315 5.315 20 H 0.273 0.727 21 H 0.134 0.866 22 H 0.122 0.878 23 H 0.142 0.858 24 H 0.102 0.898 25 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.641 -0.873 -0.001 10.677 hybrid contribution -0.190 -1.137 0.014 1.153 sum -10.831 -2.010 0.014 11.016 Atomic orbital electron populations 1.21035 0.79323 1.07120 1.06747 1.24647 0.98398 0.79991 0.91713 1.74578 0.90398 1.23267 1.26082 1.46290 1.00630 1.05903 1.61561 1.20553 0.80234 0.89618 0.93786 1.18929 0.96210 0.86811 1.46743 0.88378 1.27077 0.93528 1.06872 0.91750 1.70017 1.01157 1.38869 1.28491 0.84821 0.79630 0.73050 0.79831 1.18239 1.18676 1.17573 1.71549 1.18754 1.05786 1.28807 1.22914 0.93141 0.93525 0.96818 1.21495 0.95150 0.86777 1.37296 1.17031 0.81937 0.87245 0.74465 1.90758 1.68836 1.31734 1.52784 1.43712 1.06318 1.10326 1.71130 0.72652 0.86580 0.87791 0.85769 0.89752 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.21 71.24 0.73 -0.55 15 2 C 0.33 10.43 7.81 137.81 1.08 11.51 15 3 N -0.33 -14.20 11.73 -49.81 -0.58 -14.78 15 4 N -0.36 -19.43 4.11 -181.59 -0.75 -20.17 15 5 C 0.39 22.96 7.57 133.51 1.01 23.97 15 6 C -0.45 -24.70 9.45 23.13 0.22 -24.48 15 7 H 0.10 5.11 7.85 -2.91 -0.02 5.09 15 8 C 0.03 1.58 5.50 85.40 0.47 2.05 15 9 N -0.76 -40.90 11.86 21.91 0.26 -40.64 15 10 Si 1.01 36.80 29.56 68.60 2.03 38.83 15 11 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 12 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 13 H -0.25 -8.82 7.11 99.48 0.71 -8.12 15 14 N -0.53 -31.29 9.34 -192.99 -1.80 -33.10 15 15 C 0.10 5.52 11.97 84.75 1.01 6.53 15 16 C -0.30 -15.55 7.09 40.41 0.29 -15.26 15 17 C 0.60 26.73 7.96 86.26 0.69 27.41 15 18 O -0.56 -26.62 17.99 -4.58 -0.08 -26.70 15 19 N -0.66 -21.49 5.31 -305.23 -1.62 -23.11 15 20 H 0.43 9.74 8.77 -92.71 -0.81 8.93 15 21 H 0.12 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.10 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.12 0.97 8.13 -2.39 -0.02 0.95 15 24 H 0.29 13.85 8.29 -92.71 -0.77 13.08 15 25 H 0.18 8.37 8.06 -2.91 -0.02 8.34 15 Total: -1.00 -77.32 236.16 3.38 -73.95 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.43 Total: 14.55 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 5.49 Total: 31.17 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -4.49 Total: -131.80 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.08 Total: -26.70 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Total: -77.32 3.38 -73.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082397463.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.687 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds