Wall clock time and date at job start Mon Mar 30 2020 03:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99622 * 2 1 4 4 H 1.48504 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47094 * 299.99470 * 3 2 1 6 6 H 1.48498 * 109.47231 * 59.99883 * 3 2 1 7 7 C 1.37878 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99741 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.17932 * 60.64310 * 9 7 2 11 11 C 1.52067 * 109.21560 * 179.97438 * 9 7 2 12 12 C 1.52061 * 112.37796 * 185.14911 * 11 9 7 13 13 O 1.42903 * 110.76448 * 295.18476 * 12 11 9 14 14 C 1.36471 * 115.91848 * 84.41341 * 13 12 11 15 15 C 1.38456 * 120.29921 * 111.74601 * 14 13 12 16 16 C 1.38345 * 119.71123 * 179.69068 * 15 14 13 17 17 C 1.38263 * 120.21027 * 0.27464 * 16 15 14 18 18 C 1.38344 * 120.21965 * 359.97438 * 17 16 15 19 19 C 1.38457 * 119.71820 * 359.97438 * 18 17 16 20 20 O 1.36467 * 120.33180 * 180.02562 * 19 18 17 21 21 H 0.96993 * 120.00047 * 0.02562 * 1 2 3 22 22 H 1.09000 * 108.89873 * 64.39569 * 11 9 7 23 23 H 1.09000 * 108.82023 * 305.84213 * 11 9 7 24 24 H 1.09007 * 109.21581 * 174.85970 * 12 11 9 25 25 H 1.08995 * 109.19002 * 55.49640 * 12 11 9 26 26 H 1.08002 * 120.14921 * 359.97438 * 15 14 13 27 27 H 1.07992 * 119.89879 * 180.28995 * 16 15 14 28 28 H 1.07998 * 119.88573 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.13691 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6354 -2.5570 -0.8970 11 6 2.2445 -3.6505 0.0005 12 6 1.5624 -5.0036 -0.1257 13 8 0.7462 -5.2680 1.0172 14 6 -0.5128 -4.7424 0.9855 15 6 -1.6149 -5.5746 0.8858 16 6 -2.8860 -5.0291 0.8612 17 6 -3.0565 -3.6588 0.9301 18 6 -1.9571 -2.8243 1.0245 19 6 -0.6836 -3.3670 1.0505 20 8 0.4096 -2.5555 1.1440 21 1 -0.4850 0.8400 -0.0004 22 1 2.8126 -3.6267 0.9305 23 1 2.9317 -3.5221 -0.8358 24 1 2.3213 -5.7813 -0.2123 25 1 0.9397 -5.0088 -1.0202 26 1 -1.4831 -6.6452 0.8321 27 1 -3.7479 -5.6757 0.7882 28 1 -4.0511 -3.2385 0.9100 29 1 -2.0918 -1.7541 1.0787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082662099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:09 Heat of formation + Delta-G solvation = -52.775513 kcal Electronic energy + Delta-G solvation = -15085.594345 eV Core-core repulsion = 12553.263872 eV Total energy + Delta-G solvation = -2532.330473 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85908 -36.84041 -36.35229 -32.96192 -31.60232 -29.89305 -28.20418 -26.88740 -23.58423 -22.04595 -21.08427 -20.35854 -17.56372 -16.86004 -16.12723 -15.72543 -14.80584 -14.53619 -14.38147 -13.61012 -13.23187 -13.05754 -12.82420 -12.31810 -11.75018 -11.41146 -11.27325 -11.02445 -10.98325 -10.61532 -10.43205 -10.13361 -9.37122 -9.16506 -8.70754 -8.49862 -8.13836 -7.57655 -6.18062 -4.30006 1.81263 1.96309 3.22776 3.31052 3.34610 4.03863 4.29537 4.42212 4.92819 5.35873 5.44142 5.55105 5.59486 5.72430 5.86280 5.87170 6.15744 6.21617 6.31142 6.60080 6.65267 6.70381 6.84687 7.03931 7.21565 7.27457 7.34377 7.74639 8.03961 8.06854 8.70194 9.12172 9.40075 10.89339 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.036058 B = 0.010514 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.347977 B = 2662.540637 C = 3334.476175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.221 3.779 10 H 0.017 0.983 11 C -0.175 4.175 12 C 0.061 3.939 13 O -0.328 6.328 14 C 0.040 3.960 15 C -0.126 4.126 16 C -0.142 4.142 17 C -0.120 4.120 18 C -0.114 4.114 19 C 0.106 3.894 20 O -0.307 6.307 21 H 0.263 0.737 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.047 0.953 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -7.300 -0.793 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.563 4.563 8 H 0.087 0.913 9 C 0.168 3.832 10 H 0.035 0.965 11 C -0.213 4.213 12 C -0.013 4.013 13 O -0.245 6.245 14 C -0.004 4.004 15 C -0.145 4.145 16 C -0.160 4.160 17 C -0.139 4.139 18 C -0.133 4.133 19 C 0.060 3.940 20 O -0.223 6.223 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.999 -7.177 -0.515 7.796 hybrid contribution 0.382 0.888 -0.287 1.008 sum -2.617 -6.289 -0.803 6.859 Atomic orbital electron populations 1.70006 1.06175 1.26878 1.46106 1.25104 0.94902 0.99605 0.93325 0.86435 0.80208 0.82997 0.77745 1.19498 1.20777 1.20664 1.21122 0.92989 0.89352 1.52808 0.91284 1.19630 0.86865 0.92587 0.84098 0.96532 1.22533 1.01046 0.94897 1.02785 1.22687 0.93451 0.98173 0.87022 1.86252 1.22071 1.74548 1.41585 1.19370 0.85084 0.91445 1.04482 1.20915 0.91672 0.99288 1.02620 1.20803 0.96042 0.95093 1.04076 1.21029 0.98291 0.93323 1.01230 1.21351 0.90921 1.01203 0.99835 1.19545 0.90067 0.88552 0.95861 1.86533 1.32940 1.62557 1.40277 0.92709 0.91364 0.90644 0.89430 0.93406 0.86143 0.86418 0.86343 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.11 12.77 55.43 0.71 -23.40 15 2 C 0.08 2.13 5.39 -17.82 -0.10 2.03 15 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.53 -14.49 8.77 -34.44 -0.30 -14.79 15 8 H 0.07 1.84 7.73 -52.49 -0.41 1.43 15 9 C 0.22 5.75 2.23 -28.36 -0.06 5.69 15 10 H 0.02 0.47 7.93 -51.93 -0.41 0.06 15 11 C -0.17 -3.75 5.13 -27.68 -0.14 -3.89 15 12 C 0.06 1.16 6.51 36.68 0.24 1.39 15 13 O -0.33 -6.94 10.16 -36.70 -0.37 -7.31 15 14 C 0.04 0.86 5.73 -39.31 -0.23 0.63 15 15 C -0.13 -2.24 10.01 -39.46 -0.39 -2.63 15 16 C -0.14 -2.28 10.04 -39.53 -0.40 -2.67 15 17 C -0.12 -2.09 10.04 -39.53 -0.40 -2.49 15 18 C -0.11 -2.45 10.01 -39.46 -0.39 -2.85 15 19 C 0.11 2.51 5.74 -39.31 -0.23 2.28 15 20 O -0.31 -8.30 9.02 -36.69 -0.33 -8.63 15 21 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.07 1.50 8.14 -51.93 -0.42 1.08 15 23 H 0.08 1.47 8.12 -51.93 -0.42 1.05 15 24 H 0.09 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.05 0.87 7.93 -51.93 -0.41 0.46 15 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.12 1.68 8.06 -52.49 -0.42 1.26 15 29 H 0.14 3.12 8.06 -52.49 -0.42 2.69 15 LS Contribution 250.95 15.07 3.78 3.78 Total: -1.00 -29.97 250.95 -6.96 -36.93 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -3.32 Total: 0.16 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.40 Total: -17.30 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.71 Total: -23.40 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.70 Total: -15.95 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.97 -6.96 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082662099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.843 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds