Wall clock time and date at job start Mon Mar 30 2020 03:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99622 * 2 1 4 4 H 1.48504 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47094 * 299.99470 * 3 2 1 6 6 H 1.48498 * 109.47231 * 59.99883 * 3 2 1 7 7 C 1.37878 * 120.00357 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99741 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.17932 * 60.64310 * 9 7 2 11 11 C 1.52067 * 109.21560 * 179.97438 * 9 7 2 12 12 C 1.52061 * 112.37796 * 185.14911 * 11 9 7 13 13 O 1.42903 * 110.76448 * 295.18476 * 12 11 9 14 14 C 1.36471 * 115.91848 * 84.41341 * 13 12 11 15 15 C 1.38456 * 120.29921 * 111.74601 * 14 13 12 16 16 C 1.38345 * 119.71123 * 179.69068 * 15 14 13 17 17 C 1.38263 * 120.21027 * 0.27464 * 16 15 14 18 18 C 1.38344 * 120.21965 * 359.97438 * 17 16 15 19 19 C 1.38457 * 119.71820 * 359.97438 * 18 17 16 20 20 O 1.36467 * 120.33180 * 180.02562 * 19 18 17 21 21 H 0.96993 * 120.00047 * 0.02562 * 1 2 3 22 22 H 1.09000 * 108.89873 * 64.39569 * 11 9 7 23 23 H 1.09000 * 108.82023 * 305.84213 * 11 9 7 24 24 H 1.09007 * 109.21581 * 174.85970 * 12 11 9 25 25 H 1.08995 * 109.19002 * 55.49640 * 12 11 9 26 26 H 1.08002 * 120.14921 * 359.97438 * 15 14 13 27 27 H 1.07992 * 119.89879 * 180.28995 * 16 15 14 28 28 H 1.07998 * 119.88573 * 179.97438 * 17 16 15 29 29 H 1.07998 * 120.13691 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6354 -2.5570 -0.8970 11 6 2.2445 -3.6505 0.0005 12 6 1.5624 -5.0036 -0.1257 13 8 0.7462 -5.2680 1.0172 14 6 -0.5128 -4.7424 0.9855 15 6 -1.6149 -5.5746 0.8858 16 6 -2.8860 -5.0291 0.8612 17 6 -3.0565 -3.6588 0.9301 18 6 -1.9571 -2.8243 1.0245 19 6 -0.6836 -3.3670 1.0505 20 8 0.4096 -2.5555 1.1440 21 1 -0.4850 0.8400 -0.0004 22 1 2.8126 -3.6267 0.9305 23 1 2.9317 -3.5221 -0.8358 24 1 2.3213 -5.7813 -0.2123 25 1 0.9397 -5.0088 -1.0202 26 1 -1.4831 -6.6452 0.8321 27 1 -3.7479 -5.6757 0.7882 28 1 -4.0511 -3.2385 0.9100 29 1 -2.0918 -1.7541 1.0787 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082662099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:08 Heat of formation + Delta-G solvation = -71.365007 kcal Electronic energy + Delta-G solvation = -15086.400446 eV Core-core repulsion = 12553.263872 eV Total energy + Delta-G solvation = -2533.136574 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.47960 -38.36849 -38.13134 -34.92053 -33.39196 -31.42071 -29.78192 -28.76218 -25.42391 -23.61170 -22.61938 -22.14247 -19.21371 -18.86956 -17.71904 -17.41733 -16.62095 -16.09714 -15.95057 -15.41630 -14.79175 -14.74395 -14.58227 -13.97872 -13.34451 -13.14350 -12.90646 -12.83626 -12.50650 -12.42480 -12.25171 -11.75178 -11.30650 -10.88971 -10.74105 -10.31306 -9.65366 -9.19953 -8.23819 -6.45164 0.31349 0.44669 1.38408 1.40449 1.52628 2.35129 2.55608 2.79195 3.08726 3.57757 3.99539 4.02277 4.20578 4.22987 4.36753 4.53220 4.62320 4.66533 4.68135 4.77121 4.94704 5.13668 5.36071 5.40400 5.57572 5.64661 5.68382 5.88932 6.03596 6.46561 6.61895 7.25105 7.32630 8.83595 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.036058 B = 0.010514 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.347977 B = 2662.540637 C = 3334.476175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.025 3.975 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.220 3.780 10 H -0.018 1.018 11 C -0.169 4.169 12 C 0.064 3.936 13 O -0.339 6.339 14 C 0.023 3.977 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.138 4.138 19 C 0.056 3.944 20 O -0.340 6.340 21 H 0.265 0.735 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.131 0.869 25 H 0.051 0.949 26 H 0.155 0.845 27 H 0.171 0.829 28 H 0.155 0.845 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -9.031 -1.050 9.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.207 1.207 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.167 3.833 10 H 0.000 1.000 11 C -0.207 4.207 12 C -0.011 4.011 13 O -0.256 6.256 14 C -0.021 4.021 15 C -0.138 4.138 16 C -0.137 4.137 17 C -0.129 4.129 18 C -0.157 4.157 19 C 0.012 3.988 20 O -0.258 6.258 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.149 0.851 25 H 0.069 0.931 26 H 0.173 0.827 27 H 0.188 0.812 28 H 0.172 0.828 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.857 -8.925 -0.775 9.754 hybrid contribution 0.517 1.338 -0.204 1.449 sum -3.339 -7.587 -0.979 8.347 Atomic orbital electron populations 1.70144 1.07605 1.27691 1.46854 1.26000 0.95825 1.03225 0.92813 0.85346 0.79103 0.78355 0.77810 1.18627 1.19782 1.20653 1.21518 0.93363 0.90846 1.53552 0.91144 1.19503 0.87073 0.93979 0.82787 1.00023 1.22429 1.00199 0.95189 1.02835 1.22819 0.94050 0.97652 0.86551 1.86222 1.22502 1.74157 1.42760 1.19630 0.86276 0.90869 1.05318 1.21352 0.91020 1.00617 1.00828 1.21389 0.97073 0.94853 1.00353 1.21415 0.98387 0.93862 0.99263 1.21351 0.91917 1.00643 1.01803 1.19943 0.89713 0.89728 0.99460 1.86395 1.34518 1.64295 1.40598 0.92640 0.92451 0.89003 0.85112 0.93096 0.82717 0.81188 0.82781 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.29 12.77 21.45 0.27 -52.02 15 2 C 0.03 1.43 5.39 84.65 0.46 1.88 15 3 Si 0.97 43.79 29.54 68.60 2.03 45.81 15 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 15 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 7 C -0.56 -31.89 8.77 25.60 0.22 -31.67 15 8 H 0.07 3.87 7.73 -2.91 -0.02 3.84 15 9 C 0.22 11.99 2.23 29.54 0.07 12.06 15 10 H -0.02 -1.06 7.93 -2.39 -0.02 -1.08 15 11 C -0.17 -7.36 5.13 29.98 0.15 -7.21 15 12 C 0.06 2.33 6.51 71.67 0.47 2.79 15 13 O -0.34 -14.09 10.16 -84.22 -0.86 -14.95 15 14 C 0.02 0.96 5.73 22.45 0.13 1.09 15 15 C -0.12 -3.84 10.01 22.35 0.22 -3.62 15 16 C -0.12 -3.28 10.04 22.30 0.22 -3.06 15 17 C -0.11 -3.60 10.04 22.30 0.22 -3.38 15 18 C -0.14 -6.10 10.01 22.35 0.22 -5.88 15 19 C 0.06 2.77 5.74 22.45 0.13 2.90 15 20 O -0.34 -19.48 9.02 -84.15 -0.76 -20.24 15 21 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 22 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.09 3.60 8.12 -2.39 -0.02 3.58 15 24 H 0.13 3.63 8.14 -2.38 -0.02 3.61 15 25 H 0.05 1.82 7.93 -2.39 -0.02 1.80 15 26 H 0.16 3.89 8.06 -2.91 -0.02 3.86 15 27 H 0.17 3.03 8.06 -2.91 -0.02 3.00 15 28 H 0.15 3.82 8.06 -2.91 -0.02 3.80 15 29 H 0.11 5.34 8.06 -2.91 -0.02 5.32 15 Total: -1.00 -69.28 250.95 4.34 -64.93 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.14 Total: 10.54 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 2.52 Total: -34.08 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.27 Total: -52.02 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.62 Total: -35.19 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.28 4.34 -64.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082662099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.431 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds