Wall clock time and date at job start Mon Mar 30 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32011 * 125.94879 * 2 1 4 4 C 1.33384 * 110.02168 * 179.97438 * 3 2 1 5 5 C 1.40578 * 131.71748 * 180.02562 * 4 3 2 6 6 F 1.35098 * 120.36437 * 359.95222 * 5 4 3 7 7 C 1.37786 * 119.27680 * 179.97438 * 5 4 3 8 8 C 1.40139 * 119.53632 * 0.27672 * 7 5 4 9 9 C 1.35313 * 120.15031 * 359.45493 * 8 7 5 10 10 N 1.36274 * 120.77457 * 0.53167 * 9 8 7 11 11 C 1.38491 * 132.36162 * 179.75162 * 10 9 8 12 12 C 1.39824 * 126.89132 * 0.04755 * 11 10 9 13 13 H 1.07997 * 120.00009 * 141.87063 * 12 11 10 14 14 C 1.39866 * 120.00132 * 321.86575 * 12 11 10 15 15 N 1.31040 * 119.99830 * 156.20705 * 14 12 11 16 16 Si 1.86801 * 119.99953 * 336.20897 * 14 12 11 17 17 H 1.48500 * 109.47305 * 95.46646 * 16 14 12 18 18 H 1.48499 * 109.47160 * 215.47083 * 16 14 12 19 19 H 1.48508 * 109.47057 * 335.47193 * 16 14 12 20 20 H 1.08998 * 109.47067 * 92.53667 * 1 2 3 21 21 H 1.08992 * 109.47494 * 212.53906 * 1 2 3 22 22 H 1.09003 * 109.46932 * 332.54094 * 1 2 3 23 23 H 1.08003 * 120.23000 * 180.02562 * 7 5 4 24 24 H 1.07997 * 119.92219 * 179.69965 * 8 7 5 25 25 H 1.08003 * 119.60794 * 180.28067 * 9 8 7 26 26 H 0.97001 * 119.99433 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2819 1.0687 0.0000 4 6 3.5646 0.7027 0.0006 5 6 4.7521 1.4550 0.0013 6 9 4.7052 2.8051 0.0005 7 6 5.9645 0.8003 0.0023 8 6 5.9931 -0.6008 -0.0033 9 6 4.8371 -1.3042 0.0015 10 7 3.6329 -0.6664 0.0009 11 6 2.3293 -1.1340 0.0006 12 6 1.9168 -2.4700 0.0017 13 1 1.0542 -2.7684 0.5789 14 6 2.6213 -3.4201 -0.7449 15 7 2.5655 -4.6866 -0.4132 16 14 3.6418 -2.8835 -2.2146 17 1 5.0545 -2.6995 -1.7957 18 1 3.5706 -3.9230 -3.2727 19 1 3.1115 -1.6012 -2.7438 20 1 -0.3633 -0.0455 -1.0266 21 1 -0.3634 -0.8663 0.5527 22 1 -0.3633 0.9119 0.4739 23 1 6.8863 1.3631 0.0032 24 1 6.9399 -1.1203 -0.0074 25 1 4.8694 -2.3837 0.0017 26 1 3.0538 -5.3455 -0.9312 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082695627.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:23 Heat of formation + Delta-G solvation = 14.239166 kcal Electronic energy + Delta-G solvation = -14660.806883 eV Core-core repulsion = 12040.214831 eV Total energy + Delta-G solvation = -2620.592052 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.89817 -43.15060 -38.05856 -35.82700 -33.86474 -32.49450 -30.45516 -28.96168 -26.79396 -23.76401 -23.33629 -21.13684 -20.19875 -18.39365 -18.27998 -17.26240 -17.02140 -16.71269 -16.29576 -15.85322 -15.02690 -14.93390 -14.03633 -13.99743 -13.73667 -13.63840 -13.33517 -13.00649 -12.65434 -12.47016 -12.29486 -11.89172 -11.56750 -11.13242 -10.75511 -9.42235 -8.99125 -8.76018 -6.42331 -0.21341 0.43119 1.06075 1.18321 1.30583 1.79740 1.95273 2.00817 2.55474 2.87408 3.15620 3.48253 3.81502 4.01973 4.16931 4.54603 4.69484 4.84393 4.95232 5.01916 5.05998 5.10785 5.18454 5.27564 5.72776 5.78779 6.11991 6.21033 6.58559 6.65887 7.21545 8.09911 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.027985 B = 0.014871 C = 0.010808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.285241 B = 1882.363190 C = 2590.041481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.068 4.068 3 N -0.488 5.488 4 C 0.074 3.926 5 C 0.121 3.879 6 F -0.130 7.130 7 C -0.150 4.150 8 C -0.130 4.130 9 C 0.025 3.975 10 N -0.388 5.388 11 C 0.131 3.869 12 C -0.468 4.468 13 H 0.088 0.912 14 C 0.067 3.933 15 N -0.828 5.828 16 Si 0.905 3.095 17 H -0.213 1.213 18 H -0.260 1.260 19 H -0.290 1.290 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.185 0.815 24 H 0.195 0.805 25 H 0.158 0.842 26 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 3.103 -1.396 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.203 4.203 3 N -0.208 5.208 4 C -0.163 4.163 5 C 0.099 3.901 6 F -0.109 7.109 7 C -0.173 4.173 8 C -0.151 4.151 9 C -0.096 4.096 10 N -0.068 5.068 11 C 0.020 3.980 12 C -0.503 4.503 13 H 0.106 0.894 14 C -0.150 4.150 15 N -0.455 5.455 16 Si 0.728 3.272 17 H -0.136 1.136 18 H -0.185 1.185 19 H -0.216 1.216 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.202 0.798 24 H 0.212 0.788 25 H 0.176 0.824 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.488 3.685 -1.397 8.462 hybrid contribution 0.117 -0.632 -0.578 0.865 sum 7.605 3.053 -1.975 8.430 Atomic orbital electron populations 1.19783 0.85733 1.02040 1.01905 1.21819 0.97348 0.87032 1.14150 1.69709 0.99073 1.31876 1.20136 1.20305 0.93839 0.82411 1.19756 1.16797 0.91084 0.76353 1.05864 1.91432 1.97173 1.28347 1.93922 1.21451 0.95894 0.94949 1.05016 1.20905 0.97685 0.93104 1.03429 1.22099 0.83821 0.99975 1.03660 1.43015 1.06454 1.07037 1.50252 1.19042 0.79952 0.95471 1.03579 1.18115 1.14635 0.88509 1.29000 0.89393 1.26352 0.95507 0.94321 0.98823 1.69801 1.35939 1.03091 1.36628 0.86626 0.81990 0.78631 0.79962 1.13623 1.18518 1.21615 0.91633 0.91156 0.91300 0.79782 0.78753 0.82430 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.50 10.23 71.23 0.73 -0.77 15 2 C -0.07 -3.44 7.20 42.98 0.31 -3.13 15 3 N -0.49 -25.24 11.23 -179.44 -2.01 -27.26 15 4 C 0.07 3.58 7.76 133.77 1.04 4.62 15 5 C 0.12 4.85 7.38 22.73 0.17 5.02 15 6 F -0.13 -5.10 17.28 44.97 0.78 -4.32 15 7 C -0.15 -4.54 10.11 22.62 0.23 -4.31 15 8 C -0.13 -3.88 10.00 22.06 0.22 -3.66 15 9 C 0.02 0.97 7.37 83.33 0.61 1.59 15 10 N -0.39 -18.57 2.48 -343.67 -0.85 -19.43 15 11 C 0.13 6.77 5.47 38.92 0.21 6.98 15 12 C -0.47 -24.71 9.40 23.05 0.22 -24.49 15 13 H 0.09 4.89 7.95 -2.91 -0.02 4.87 15 14 C 0.07 3.33 4.88 85.21 0.42 3.74 15 15 N -0.83 -41.16 13.94 21.83 0.30 -40.85 15 16 Si 0.91 38.39 24.41 68.60 1.67 40.06 15 17 H -0.21 -7.68 5.49 99.48 0.55 -7.14 15 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 19 H -0.29 -14.13 7.11 99.48 0.71 -13.42 15 20 H 0.06 2.49 8.14 -2.39 -0.02 2.47 15 21 H 0.07 2.74 7.92 -2.39 -0.02 2.72 15 22 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.18 3.83 8.06 -2.91 -0.02 3.80 15 24 H 0.20 3.77 8.06 -2.91 -0.02 3.75 15 25 H 0.16 6.08 5.43 -2.91 -0.02 6.07 15 26 H 0.30 13.16 8.30 -92.71 -0.77 12.39 15 Total: -1.00 -62.91 230.84 5.09 -57.82 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.05 Total: 8.40 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.15 Total: -14.42 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -2.56 Total: -87.54 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.78 Total: -4.32 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.67 Total: 40.06 kcal Total: -62.91 5.09 -57.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082695627.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.064 kcal (2) G-P(sol) polarization free energy of solvation -62.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds