Wall clock time and date at job start Mon Mar 30 2020 03:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 C 1.50702 * 109.47406 * 64.99564 * 10 9 7 13 13 O 1.20828 * 119.99666 * 0.02562 * 12 10 9 14 14 O 1.34226 * 120.00263 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 16 16 C 1.38232 * 119.99598 * 299.71896 * 15 10 9 17 17 C 1.38241 * 119.99606 * 179.78672 * 16 15 10 18 18 C 1.38235 * 119.99898 * 0.44997 * 17 16 15 19 19 C 1.38232 * 120.00296 * 359.80690 * 18 17 16 20 20 C 1.38233 * 119.99919 * 120.00104 * 15 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 0.96700 * 116.99995 * 180.02562 * 14 12 10 25 25 H 1.08004 * 120.00188 * 0.02562 * 16 15 10 26 26 H 1.08003 * 119.99552 * 180.27614 * 17 16 15 27 27 H 1.07997 * 119.99493 * 179.83406 * 18 17 16 28 28 H 1.07994 * 120.00222 * 180.02562 * 19 18 17 29 29 H 1.07995 * 120.00261 * 359.97201 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 6 3.0279 -3.6596 1.2773 13 8 2.8124 -2.8145 2.1136 14 8 3.9645 -4.5960 1.4953 15 6 1.4956 -4.9631 -0.1402 16 6 0.5696 -5.3259 0.8198 17 6 -0.1211 -6.5173 0.6985 18 6 0.1211 -7.3501 -0.3779 19 6 1.0510 -6.9898 -1.3351 20 6 1.7385 -5.7964 -1.2161 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.4403 -4.5537 2.3361 25 1 0.3828 -4.6768 1.6626 26 1 -0.8479 -6.7986 1.4463 27 1 -0.4166 -8.2820 -0.4712 28 1 1.2399 -7.6402 -2.1762 29 1 2.4650 -5.5148 -1.9639 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:33 Heat of formation + Delta-G solvation = -78.228460 kcal Electronic energy + Delta-G solvation = -14502.812494 eV Core-core repulsion = 11969.378299 eV Total energy + Delta-G solvation = -2533.434195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.89430 -38.54220 -35.53409 -34.01990 -32.19162 -30.59772 -28.97121 -25.81242 -22.77085 -22.36817 -21.76184 -19.39591 -17.41073 -16.86221 -16.10616 -15.87625 -15.06486 -14.54157 -14.35207 -14.12746 -13.11313 -12.88865 -12.72152 -12.30421 -12.08909 -11.45833 -11.04743 -11.02659 -10.82144 -10.69663 -10.53991 -10.33306 -9.74604 -9.62405 -9.15649 -8.61037 -8.31743 -8.30041 -5.95821 -3.96073 1.65580 1.71040 3.02894 3.37682 3.41374 3.45203 3.73811 4.16741 4.50978 5.14604 5.17964 5.26217 5.41174 5.43811 5.79424 5.80984 5.99411 6.02614 6.23494 6.37793 6.61706 6.73809 6.78369 6.98034 7.12085 7.31007 7.55513 7.67708 7.97701 8.35197 8.68051 9.02871 9.65442 11.15861 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.008368 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.869095 B = 3345.238931 C = 3711.240571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.036 4.036 11 H 0.103 0.897 12 C 0.479 3.521 13 O -0.481 6.481 14 O -0.530 6.530 15 C -0.059 4.059 16 C -0.109 4.109 17 C -0.120 4.120 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.111 4.111 21 H 0.261 0.739 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.395 0.605 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 -13.045 -0.525 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.005 3.995 10 C -0.055 4.055 11 H 0.121 0.879 12 C 0.319 3.681 13 O -0.365 6.365 14 O -0.342 6.342 15 C -0.059 4.059 16 C -0.127 4.127 17 C -0.138 4.138 18 C -0.149 4.149 19 C -0.141 4.141 20 C -0.129 4.129 21 H 0.070 0.930 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.252 0.748 25 H 0.140 0.860 26 H 0.136 0.864 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.580 -12.680 -0.660 12.956 hybrid contribution 0.757 1.031 0.583 1.406 sum 3.337 -11.648 -0.077 12.117 Atomic orbital electron populations 1.69942 1.05961 1.26691 1.51004 1.24904 0.94812 0.99068 0.95323 0.86650 0.79598 0.83164 0.78550 1.20317 1.21300 1.20261 1.20964 0.92595 0.90575 1.50347 0.93066 1.19136 0.92644 0.89084 0.98624 1.20428 0.97293 0.95289 0.92526 0.87931 1.23568 0.77458 0.77460 0.89571 1.90743 1.64407 1.35845 1.45470 1.84612 1.50771 1.54522 1.44257 1.19759 0.96476 0.94739 0.94916 1.21124 0.95868 0.96425 0.99235 1.21078 0.99758 0.94712 0.98286 1.21048 0.98987 0.99667 0.95208 1.21049 0.97189 0.96859 0.99039 1.21064 0.99854 0.94109 0.97826 0.92962 0.95109 0.94843 0.74774 0.85972 0.86367 0.86594 0.86391 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 15 7 C -0.51 -14.44 7.75 -34.44 -0.27 -14.71 15 8 H 0.05 1.44 7.61 -52.49 -0.40 1.04 15 9 C 0.04 1.08 3.85 -27.88 -0.11 0.97 15 10 C -0.04 -0.75 2.43 -92.92 -0.23 -0.98 15 11 H 0.10 1.99 7.88 -51.92 -0.41 1.58 15 12 C 0.48 9.86 6.90 36.01 0.25 10.11 15 13 O -0.48 -11.71 15.74 -18.75 -0.30 -12.00 15 14 O -0.53 -8.61 13.34 -39.25 -0.52 -9.13 15 15 C -0.06 -1.06 4.71 -104.63 -0.49 -1.55 15 16 C -0.11 -1.90 8.86 -39.58 -0.35 -2.25 15 17 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 15 18 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 15 19 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 15 20 C -0.11 -1.71 9.67 -39.58 -0.38 -2.10 15 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.03 0.86 7.40 -51.93 -0.38 0.47 15 23 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.40 4.59 9.10 45.56 0.41 5.01 15 25 H 0.12 2.26 7.65 -52.48 -0.40 1.85 15 26 H 0.12 1.44 8.06 -52.48 -0.42 1.02 15 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 15 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.12 1.67 7.95 -52.49 -0.42 1.25 15 LS Contribution 261.20 15.07 3.94 3.94 Total: -1.00 -33.20 261.20 -6.46 -39.65 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -2.42 Total: 1.96 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.87 Total: -15.21 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.82 Total: -21.14 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.20 -6.46 -39.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.575 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds