Wall clock time and date at job start Mon Mar 30 2020 03:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 109.46866 * 305.00034 * 10 9 7 12 12 C 1.50702 * 109.47406 * 64.99564 * 10 9 7 13 13 O 1.20828 * 119.99666 * 0.02562 * 12 10 9 14 14 O 1.34226 * 120.00263 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47144 * 185.00130 * 10 9 7 16 16 C 1.38232 * 119.99598 * 299.71896 * 15 10 9 17 17 C 1.38241 * 119.99606 * 179.78672 * 16 15 10 18 18 C 1.38235 * 119.99898 * 0.44997 * 17 16 15 19 19 C 1.38232 * 120.00296 * 359.80690 * 18 17 16 20 20 C 1.38233 * 119.99919 * 120.00104 * 15 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 0.96700 * 116.99995 * 180.02562 * 14 12 10 25 25 H 1.08004 * 120.00188 * 0.02562 * 16 15 10 26 26 H 1.08003 * 119.99552 * 180.27614 * 17 16 15 27 27 H 1.07997 * 119.99493 * 179.83406 * 18 17 16 28 28 H 1.07994 * 120.00222 * 180.02562 * 19 18 17 29 29 H 1.07995 * 120.00261 * 359.97201 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9293 -3.5515 -0.8518 12 6 3.0279 -3.6596 1.2773 13 8 2.8124 -2.8145 2.1136 14 8 3.9645 -4.5960 1.4953 15 6 1.4956 -4.9631 -0.1402 16 6 0.5696 -5.3259 0.8198 17 6 -0.1211 -6.5173 0.6985 18 6 0.1211 -7.3501 -0.3779 19 6 1.0510 -6.9898 -1.3351 20 6 1.7385 -5.7964 -1.2161 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.4403 -4.5537 2.3361 25 1 0.3828 -4.6768 1.6626 26 1 -0.8479 -6.7986 1.4463 27 1 -0.4166 -8.2820 -0.4712 28 1 1.2399 -7.6402 -2.1762 29 1 2.4650 -5.5148 -1.9639 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451245.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:32 Heat of formation + Delta-G solvation = -99.732801 kcal Electronic energy + Delta-G solvation = -14503.744993 eV Core-core repulsion = 11969.378299 eV Total energy + Delta-G solvation = -2534.366693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45083 -39.83041 -37.10027 -35.82195 -34.11019 -31.75688 -30.59621 -27.66008 -24.71860 -23.59847 -23.08688 -20.96961 -18.99691 -18.68658 -17.66947 -17.41704 -16.58519 -16.48570 -15.69728 -15.44162 -14.56593 -14.43650 -14.15110 -13.93012 -13.66389 -13.30229 -12.92472 -12.63702 -12.43124 -12.40725 -12.18022 -11.89316 -11.57234 -11.45626 -11.16594 -10.55062 -9.77260 -9.57668 -8.18356 -6.25877 0.45304 0.54599 1.36691 1.39603 1.41403 1.48214 2.27501 2.41272 2.95877 3.16318 3.79865 3.97638 4.19914 4.31216 4.34396 4.44670 4.67696 4.75420 4.86953 5.12514 5.20461 5.36660 5.49951 5.60261 5.64784 5.68493 5.77354 5.79209 6.15025 6.18119 6.81957 7.17694 7.39741 8.93710 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.035085 B = 0.008368 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.869095 B = 3345.238931 C = 3711.240571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.051 0.949 9 C 0.053 3.947 10 C -0.032 4.032 11 H 0.116 0.884 12 C 0.489 3.511 13 O -0.529 6.529 14 O -0.511 6.511 15 C -0.084 4.084 16 C -0.135 4.135 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.117 4.117 20 C -0.117 4.117 21 H 0.263 0.737 22 H -0.005 1.005 23 H 0.012 0.988 24 H 0.419 0.581 25 H 0.094 0.906 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -14.852 -1.607 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.016 3.984 10 C -0.051 4.051 11 H 0.133 0.867 12 C 0.332 3.668 13 O -0.417 6.417 14 O -0.324 6.324 15 C -0.084 4.084 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.135 4.135 21 H 0.071 0.929 22 H 0.013 0.987 23 H 0.031 0.969 24 H 0.280 0.720 25 H 0.113 0.887 26 H 0.157 0.843 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.529 -14.522 -1.746 15.046 hybrid contribution 0.468 1.441 0.933 1.780 sum 3.996 -13.081 -0.813 13.702 Atomic orbital electron populations 1.70074 1.07554 1.27649 1.52111 1.25824 0.95734 1.02962 0.95035 0.85599 0.78423 0.78682 0.78936 1.18523 1.20570 1.20349 1.21351 0.92788 0.91984 1.49691 0.93083 1.18824 0.93023 0.90726 0.95779 1.20150 0.96718 0.95097 0.93182 0.86661 1.23465 0.77414 0.77046 0.88914 1.90725 1.66004 1.38004 1.46995 1.84524 1.49568 1.52493 1.45833 1.19611 0.97628 0.94322 0.96830 1.21084 0.97467 0.97771 0.98992 1.21362 0.99553 0.93683 0.99563 1.21526 0.98251 1.00374 0.93791 1.21506 0.95904 0.96144 0.99879 1.21315 1.00530 0.94567 0.97054 0.92853 0.98662 0.96949 0.72043 0.88743 0.84255 0.82756 0.82620 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.45 0.28 -58.15 15 2 C 0.00 0.11 5.46 84.66 0.46 0.57 15 3 Si 0.96 46.30 29.54 68.60 2.03 48.32 15 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 15 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 15 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 15 7 C -0.52 -30.52 7.75 25.60 0.20 -30.32 15 8 H 0.05 2.92 7.61 -2.91 -0.02 2.90 15 9 C 0.05 2.89 3.85 29.85 0.11 3.01 15 10 C -0.03 -1.37 2.43 -12.29 -0.03 -1.40 15 11 H 0.12 4.49 7.88 -2.38 -0.02 4.47 15 12 C 0.49 20.45 6.90 71.24 0.49 20.94 15 13 O -0.53 -26.70 15.74 21.96 0.35 -26.35 15 14 O -0.51 -16.00 13.34 -51.38 -0.69 -16.68 15 15 C -0.08 -3.03 4.71 -19.87 -0.09 -3.12 15 16 C -0.13 -4.82 8.86 22.27 0.20 -4.62 15 17 C -0.12 -3.42 10.05 22.27 0.22 -3.20 15 18 C -0.12 -2.75 10.05 22.27 0.22 -2.53 15 19 C -0.12 -2.68 10.05 22.27 0.22 -2.46 15 20 C -0.12 -3.37 9.67 22.27 0.22 -3.16 15 21 H 0.26 15.50 8.31 -92.70 -0.77 14.73 15 22 H 0.00 -0.30 7.40 -2.38 -0.02 -0.32 15 23 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 24 H 0.42 9.04 9.10 -74.06 -0.67 8.36 15 25 H 0.09 3.78 7.65 -2.91 -0.02 3.76 15 26 H 0.14 3.14 8.06 -2.91 -0.02 3.12 15 27 H 0.15 2.34 8.06 -2.91 -0.02 2.31 15 28 H 0.16 2.43 8.06 -2.91 -0.02 2.40 15 29 H 0.14 3.44 7.95 -2.91 -0.02 3.42 15 Total: -1.00 -74.17 261.20 4.68 -69.49 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.48 Total: 9.67 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 2.23 Total: -26.30 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -0.34 Total: -43.03 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.17 4.68 -69.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451245.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.240 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds