Wall clock time and date at job start Mon Mar 30 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99542 * 2 1 4 4 H 1.48499 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47376 * 300.00204 * 3 2 1 6 6 H 1.48509 * 109.46988 * 59.99975 * 3 2 1 7 7 C 1.37876 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47285 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47193 * 54.99841 * 10 9 7 12 12 C 1.50706 * 109.46819 * 295.00168 * 10 9 7 13 13 O 1.20825 * 119.99859 * 239.99256 * 12 10 9 14 14 O 1.34224 * 120.00295 * 60.00215 * 12 10 9 15 15 C 1.50694 * 109.47528 * 174.99854 * 10 9 7 16 16 C 1.38241 * 119.99692 * 59.72383 * 15 10 9 17 17 C 1.38241 * 120.00056 * 179.80759 * 16 15 10 18 18 C 1.38242 * 119.99517 * 0.40458 * 17 16 15 19 19 C 1.38230 * 120.00275 * 359.85261 * 18 17 16 20 20 C 1.38234 * 120.00326 * 240.00245 * 15 10 9 21 21 H 0.96997 * 120.00427 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47453 * 59.99839 * 9 7 2 23 23 H 1.09004 * 109.46993 * 300.00022 * 9 7 2 24 24 H 0.96700 * 117.00196 * 179.97438 * 14 12 10 25 25 H 1.07995 * 120.00123 * 0.02562 * 16 15 10 26 26 H 1.07997 * 120.00345 * 180.23157 * 17 16 15 27 27 H 1.08000 * 119.99480 * 179.83300 * 18 17 16 28 28 H 1.08000 * 120.00524 * 179.97438 * 19 18 17 29 29 H 1.07996 * 119.99691 * 359.97438 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3966 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8412 12 6 3.0283 -3.6535 -1.2883 13 8 2.9825 -4.6066 -2.0294 14 8 3.7765 -2.5871 -1.6119 15 6 1.4962 -4.9636 0.1233 16 6 0.5619 -5.3169 -0.8323 17 6 -0.1226 -6.5127 -0.7209 18 6 0.1213 -7.3514 0.3507 19 6 1.0517 -6.9956 1.3091 20 6 1.7390 -5.8016 1.1955 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 4.2610 -2.6281 -2.4477 25 1 0.3692 -4.6603 -1.6678 26 1 -0.8498 -6.7905 -1.4694 27 1 -0.4154 -8.2844 0.4392 28 1 1.2419 -7.6506 2.1465 29 1 2.4660 -5.5236 1.9443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451248.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:35 Heat of formation + Delta-G solvation = -79.438899 kcal Electronic energy + Delta-G solvation = -14532.641248 eV Core-core repulsion = 11999.154565 eV Total energy + Delta-G solvation = -2533.486684 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.93269 -38.43379 -35.35227 -34.24651 -32.15451 -30.50772 -29.03675 -25.70831 -22.63995 -22.32337 -21.83616 -19.54802 -17.38106 -16.66608 -16.07105 -15.78709 -14.93741 -14.68276 -14.33143 -14.03530 -13.01896 -12.96073 -12.58807 -12.35090 -12.06706 -11.51995 -11.14001 -10.98280 -10.80365 -10.75851 -10.50716 -10.43576 -9.64384 -9.60707 -9.17314 -8.49640 -8.40194 -8.24411 -6.03213 -4.04867 1.73999 1.82773 2.97384 3.30874 3.38826 3.43869 3.81902 4.32281 4.45563 5.18987 5.24569 5.32850 5.34586 5.48454 5.84231 5.90511 6.02552 6.06716 6.33140 6.46648 6.48859 6.81272 6.87641 7.07475 7.18526 7.40520 7.51845 7.52477 7.95995 8.27895 8.68351 9.03146 9.59284 11.08183 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.036413 B = 0.008354 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.771294 B = 3350.888882 C = 3712.354429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.036 3.964 10 C -0.044 4.044 11 H 0.104 0.896 12 C 0.500 3.500 13 O -0.540 6.540 14 O -0.487 6.487 15 C -0.058 4.058 16 C -0.082 4.082 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.115 4.115 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.036 0.964 24 H 0.390 0.610 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 -9.665 0.414 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.091 0.909 9 C -0.001 4.001 10 C -0.063 4.063 11 H 0.122 0.878 12 C 0.344 3.656 13 O -0.431 6.431 14 O -0.295 6.295 15 C -0.058 4.058 16 C -0.100 4.100 17 C -0.143 4.143 18 C -0.147 4.147 19 C -0.146 4.146 20 C -0.133 4.133 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.246 0.754 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.644 -9.771 0.600 10.140 hybrid contribution 0.647 0.951 -0.599 1.297 sum 3.291 -8.820 0.001 9.414 Atomic orbital electron populations 1.69976 1.06110 1.26637 1.50936 1.24994 0.94769 0.99318 0.95300 0.86494 0.80254 0.83583 0.77415 1.19522 1.21194 1.21185 1.21351 0.93764 0.89990 1.50233 0.90888 1.19187 0.92722 0.89448 0.98754 1.20302 0.97749 0.95369 0.92841 0.87805 1.23423 0.75841 0.78372 0.87961 1.90636 1.63193 1.36401 1.52887 1.84866 1.58054 1.43173 1.43363 1.19621 0.96526 0.94667 0.94971 1.20997 0.94677 0.96118 0.98171 1.21072 1.00132 0.94824 0.98288 1.21026 0.98937 0.99550 0.95234 1.20987 0.97547 0.96889 0.99187 1.21009 1.00124 0.94235 0.97928 0.93017 0.95813 0.94611 0.75429 0.86235 0.86481 0.86701 0.86522 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.52 -13.77 8.05 -34.44 -0.28 -14.05 15 8 H 0.07 1.90 6.36 -52.49 -0.33 1.57 15 9 C 0.04 0.89 4.17 -27.89 -0.12 0.77 15 10 C -0.04 -0.89 2.46 -92.93 -0.23 -1.12 15 11 H 0.10 1.99 7.88 -51.93 -0.41 1.58 15 12 C 0.50 10.20 7.48 36.01 0.27 10.47 15 13 O -0.54 -11.61 15.89 -18.75 -0.30 -11.90 15 14 O -0.49 -9.14 11.02 -39.24 -0.43 -9.58 15 15 C -0.06 -1.10 4.39 -104.63 -0.46 -1.56 15 16 C -0.08 -1.53 7.99 -39.58 -0.32 -1.85 15 17 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 15 18 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 15 19 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 15 20 C -0.11 -1.89 9.67 -39.58 -0.38 -2.27 15 21 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 22 H 0.02 0.63 7.56 -51.93 -0.39 0.24 15 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.39 5.25 9.10 45.56 0.41 5.66 15 25 H 0.12 2.35 7.58 -52.49 -0.40 1.96 15 26 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 27 H 0.11 1.30 8.06 -52.49 -0.42 0.88 15 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 29 H 0.12 1.71 7.95 -52.49 -0.42 1.29 15 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -31.58 257.92 -6.29 -37.88 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -2.36 Total: 4.06 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.80 Total: -15.02 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.73 Total: -21.48 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.58 -6.29 -37.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451248.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.563 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds