Wall clock time and date at job start Mon Mar 30 2020 03:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99542 * 2 1 4 4 H 1.48499 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47376 * 300.00204 * 3 2 1 6 6 H 1.48509 * 109.46988 * 59.99975 * 3 2 1 7 7 C 1.37876 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47285 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47193 * 54.99841 * 10 9 7 12 12 C 1.50706 * 109.46819 * 295.00168 * 10 9 7 13 13 O 1.20825 * 119.99859 * 239.99256 * 12 10 9 14 14 O 1.34224 * 120.00295 * 60.00215 * 12 10 9 15 15 C 1.50694 * 109.47528 * 174.99854 * 10 9 7 16 16 C 1.38241 * 119.99692 * 59.72383 * 15 10 9 17 17 C 1.38241 * 120.00056 * 179.80759 * 16 15 10 18 18 C 1.38242 * 119.99517 * 0.40458 * 17 16 15 19 19 C 1.38230 * 120.00275 * 359.85261 * 18 17 16 20 20 C 1.38234 * 120.00326 * 240.00245 * 15 10 9 21 21 H 0.96997 * 120.00427 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47453 * 59.99839 * 9 7 2 23 23 H 1.09004 * 109.46993 * 300.00022 * 9 7 2 24 24 H 0.96700 * 117.00196 * 179.97438 * 14 12 10 25 25 H 1.07995 * 120.00123 * 0.02562 * 16 15 10 26 26 H 1.07997 * 120.00345 * 180.23157 * 17 16 15 27 27 H 1.08000 * 119.99480 * 179.83300 * 18 17 16 28 28 H 1.08000 * 120.00524 * 179.97438 * 19 18 17 29 29 H 1.07996 * 119.99691 * 359.97438 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3966 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8412 12 6 3.0283 -3.6535 -1.2883 13 8 2.9825 -4.6066 -2.0294 14 8 3.7765 -2.5871 -1.6119 15 6 1.4962 -4.9636 0.1233 16 6 0.5619 -5.3169 -0.8323 17 6 -0.1226 -6.5127 -0.7209 18 6 0.1213 -7.3514 0.3507 19 6 1.0517 -6.9956 1.3091 20 6 1.7390 -5.8016 1.1955 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8902 23 1 0.6249 -2.5570 0.8897 24 1 4.2610 -2.6281 -2.4477 25 1 0.3692 -4.6603 -1.6678 26 1 -0.8498 -6.7905 -1.4694 27 1 -0.4154 -8.2844 0.4392 28 1 1.2419 -7.6506 2.1465 29 1 2.4660 -5.5236 1.9443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451248.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:35 Heat of formation + Delta-G solvation = -98.978353 kcal Electronic energy + Delta-G solvation = -14533.488543 eV Core-core repulsion = 11999.154565 eV Total energy + Delta-G solvation = -2534.333978 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.47885 -39.77001 -36.92213 -36.03286 -34.02137 -31.74590 -30.62804 -27.54148 -24.50126 -23.66889 -23.23370 -21.04743 -19.04700 -18.44426 -17.52445 -17.36425 -16.72927 -16.16166 -15.92786 -15.42050 -14.56163 -14.34476 -14.10551 -14.03717 -13.65792 -13.28183 -12.90194 -12.60392 -12.49373 -12.36566 -12.12131 -11.84577 -11.46350 -11.29822 -11.18425 -10.53151 -9.74059 -9.57105 -8.14972 -6.23408 0.47315 0.57745 1.34166 1.44139 1.45612 1.58946 2.38325 2.46053 3.03348 3.19854 3.77429 3.98284 4.21553 4.31793 4.39460 4.54908 4.60991 4.71085 4.78652 5.15080 5.20895 5.41543 5.44203 5.60024 5.65082 5.73266 5.79773 5.84476 6.17199 6.21342 6.91939 7.20715 7.45053 8.97340 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.036413 B = 0.008354 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.771294 B = 3350.888882 C = 3712.354429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.257 1.257 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.048 3.952 10 C -0.038 4.038 11 H 0.117 0.883 12 C 0.502 3.498 13 O -0.553 6.553 14 O -0.492 6.492 15 C -0.086 4.086 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.124 4.124 21 H 0.261 0.739 22 H -0.008 1.008 23 H 0.011 0.989 24 H 0.413 0.587 25 H 0.092 0.908 26 H 0.137 0.863 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.022 -10.806 1.252 11.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.099 0.901 9 C 0.011 3.989 10 C -0.057 4.057 11 H 0.135 0.865 12 C 0.347 3.653 13 O -0.445 6.445 14 O -0.303 6.303 15 C -0.086 4.086 16 C -0.130 4.130 17 C -0.150 4.150 18 C -0.140 4.140 19 C -0.140 4.140 20 C -0.141 4.141 21 H 0.070 0.930 22 H 0.011 0.989 23 H 0.030 0.970 24 H 0.272 0.728 25 H 0.111 0.889 26 H 0.155 0.845 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.673 -10.916 1.424 11.605 hybrid contribution 0.318 1.226 -0.875 1.540 sum 3.991 -9.689 0.550 10.493 Atomic orbital electron populations 1.70114 1.07855 1.27536 1.52406 1.25896 0.95550 1.03153 0.95102 0.85425 0.79477 0.79013 0.77279 1.18106 1.21127 1.20822 1.21728 0.94269 0.90789 1.49127 0.90099 1.18901 0.92943 0.91035 0.96029 1.20142 0.97055 0.94897 0.93602 0.86496 1.23349 0.75818 0.78427 0.87751 1.90618 1.63733 1.37025 1.53131 1.84781 1.58010 1.42465 1.45060 1.19632 0.97523 0.94813 0.96660 1.20981 0.96431 0.97462 0.98103 1.21371 1.00078 0.93947 0.99615 1.21504 0.98342 1.00297 0.93892 1.21467 0.96270 0.96293 1.00008 1.21313 1.00834 0.94682 0.97320 0.93009 0.98936 0.97039 0.72752 0.88941 0.84467 0.82853 0.82695 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.29 13.29 21.45 0.28 -56.00 15 2 C 0.00 0.01 5.46 84.65 0.46 0.47 15 3 Si 0.96 43.55 29.54 68.60 2.03 45.58 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 15 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 7 C -0.52 -28.17 8.05 25.60 0.21 -27.97 15 8 H 0.08 4.17 6.36 -2.91 -0.02 4.15 15 9 C 0.05 2.47 4.17 29.85 0.12 2.59 15 10 C -0.04 -1.58 2.46 -12.29 -0.03 -1.61 15 11 H 0.12 4.45 7.88 -2.39 -0.02 4.44 15 12 C 0.50 20.61 7.48 71.24 0.53 21.14 15 13 O -0.55 -23.94 15.89 21.97 0.35 -23.59 15 14 O -0.49 -18.19 11.02 -51.35 -0.57 -18.76 15 15 C -0.09 -3.30 4.39 -19.87 -0.09 -3.38 15 16 C -0.11 -4.30 7.99 22.27 0.18 -4.12 15 17 C -0.13 -4.07 10.05 22.27 0.22 -3.85 15 18 C -0.12 -3.12 10.05 22.27 0.22 -2.90 15 19 C -0.12 -3.14 10.05 22.27 0.22 -2.91 15 20 C -0.12 -3.85 9.67 22.27 0.22 -3.63 15 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 22 H -0.01 -0.44 7.56 -2.39 -0.02 -0.46 15 23 H 0.01 0.63 8.14 -2.38 -0.02 0.61 15 24 H 0.41 10.66 9.10 -74.06 -0.67 9.98 15 25 H 0.09 3.93 7.58 -2.91 -0.02 3.90 15 26 H 0.14 3.51 8.06 -2.91 -0.02 3.49 15 27 H 0.15 2.72 8.06 -2.91 -0.02 2.69 15 28 H 0.16 2.77 8.06 -2.91 -0.02 2.74 15 29 H 0.14 3.65 7.95 -2.91 -0.02 3.63 15 Total: -1.00 -68.79 257.92 4.85 -63.94 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.49 Total: 15.01 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 2.27 Total: -26.17 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.00 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.22 Total: -42.35 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.79 4.85 -63.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451248.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.043 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds