Wall clock time and date at job start Mon Mar 30 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00422 * 2 1 4 4 H 1.48503 * 109.47233 * 270.00090 * 3 2 1 5 5 H 1.48500 * 109.47210 * 30.00234 * 3 2 1 6 6 H 1.48500 * 109.47245 * 150.00277 * 3 2 1 7 7 C 1.37882 * 119.99352 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99594 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00533 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47457 * 180.02562 * 9 7 2 11 11 N 1.40223 * 126.19176 * 269.97201 * 10 9 7 12 12 C 1.30963 * 107.91473 * 179.74509 * 11 10 9 13 13 C 1.41809 * 132.97335 * 179.48912 * 12 11 10 14 14 N 1.30753 * 119.65389 * 180.47014 * 13 12 11 15 15 C 1.33940 * 121.57485 * 0.27852 * 14 13 12 16 16 C 1.34490 * 121.59076 * 359.97438 * 15 14 13 17 17 N 1.37743 * 119.79011 * 0.02562 * 16 15 14 18 18 C 1.34497 * 133.00119 * 179.97438 * 17 16 15 19 19 O 1.21887 * 126.08054 * 0.03552 * 18 17 16 20 20 H 0.97004 * 119.99420 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46915 * 59.99536 * 9 7 2 22 22 H 1.08998 * 109.46694 * 300.00086 * 9 7 2 23 23 H 1.08002 * 120.17517 * 0.75000 * 13 12 11 24 24 H 1.08004 * 119.20378 * 179.97438 * 15 14 13 25 25 H 1.07995 * 120.10303 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6128 -0.0015 11 7 2.7413 -4.2420 -1.1330 12 6 3.5534 -5.1837 -0.7221 13 6 4.3565 -6.1330 -1.4039 14 7 5.0792 -6.9802 -0.7186 15 6 5.0781 -6.9801 0.6208 16 6 4.3340 -6.1085 1.3246 17 7 3.5495 -5.1889 0.6642 18 6 2.7204 -4.2182 1.0875 19 8 2.4792 -3.9360 2.2485 20 1 -0.4849 0.8401 -0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6240 -2.5575 0.8880 23 1 4.3747 -6.1531 -2.4836 24 1 5.6895 -7.6974 1.1483 25 1 4.3516 -6.1295 2.4042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085438905.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:46 Heat of formation + Delta-G solvation = 91.822161 kcal Electronic energy + Delta-G solvation = -14251.532560 eV Core-core repulsion = 11654.224721 eV Total energy + Delta-G solvation = -2597.307839 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.75125 -38.84129 -36.70831 -34.63002 -33.25512 -31.79021 -29.31664 -28.08511 -25.27529 -23.27093 -23.01355 -21.28752 -18.49998 -17.86776 -17.09348 -16.21238 -16.03651 -15.36953 -15.20154 -14.54189 -13.98002 -13.69573 -13.12613 -12.68438 -11.96917 -11.83476 -11.58945 -11.43988 -11.04685 -10.85829 -10.39851 -10.19465 -10.00694 -9.74320 -8.89178 -8.64455 -7.52097 -6.26880 -4.33847 0.44461 1.59712 2.00100 3.01094 3.22328 3.26696 3.28368 3.34867 3.53609 4.22105 4.27632 4.33150 4.50320 5.04728 5.09770 5.20662 5.54016 5.91510 6.09587 6.43577 6.83958 6.96307 7.07155 7.59913 7.67471 7.84065 7.97808 8.37964 8.68779 9.31636 10.81450 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.049559 B = 0.007477 C = 0.007267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.843131 B = 3743.703683 C = 3852.162037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.279 3.721 10 N -0.387 5.387 11 N -0.226 5.226 12 C 0.190 3.810 13 C 0.188 3.812 14 N -0.436 5.436 15 C -0.030 4.030 16 C 0.100 3.900 17 N -0.479 5.479 18 C 0.632 3.368 19 O -0.540 6.540 20 H 0.269 0.731 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.192 0.808 24 H 0.175 0.825 25 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -11.694 -1.362 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.207 5.207 11 N -0.055 5.055 12 C -0.079 4.079 13 C -0.005 4.005 14 N -0.147 5.147 15 C -0.165 4.165 16 C -0.023 4.023 17 N -0.198 5.198 18 C 0.333 3.667 19 O -0.412 6.412 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.209 0.791 24 H 0.192 0.808 25 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.379 -11.333 -1.428 13.599 hybrid contribution 0.208 1.243 1.150 1.707 sum 7.586 -10.090 -0.278 12.627 Atomic orbital electron populations 1.69917 1.06022 1.27799 1.49060 1.24904 0.95021 0.99421 0.94300 0.86306 0.79682 0.82025 0.78362 1.20197 1.20769 1.19758 1.21283 0.93679 0.89726 1.53168 0.91933 1.19789 0.84900 0.78665 1.00314 1.50191 1.39605 1.30665 1.00203 1.77528 1.10412 1.06296 1.11219 1.22654 1.02389 1.00644 0.82256 1.22883 0.89561 0.87369 1.00734 1.68027 1.17436 1.20745 1.08510 1.21847 1.03317 1.01681 0.89670 1.22589 0.90943 0.88472 1.00274 1.43886 1.37668 1.29549 1.08678 1.16644 0.82060 0.81097 0.86891 1.91090 1.65936 1.68744 1.15465 0.92140 0.92109 0.92051 0.79085 0.80750 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.29 55.43 0.74 -24.71 15 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 15 3 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.54 -15.25 9.39 -34.44 -0.32 -15.57 15 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 15 9 C 0.28 7.32 6.12 -5.20 -0.03 7.29 15 10 N -0.39 -9.12 3.60 -66.39 -0.24 -9.36 15 11 N -0.23 -4.59 12.61 31.38 0.40 -4.19 15 12 C 0.19 3.20 7.92 -155.56 -1.23 1.97 15 13 C 0.19 2.33 11.37 -16.65 -0.19 2.14 15 14 N -0.44 -5.29 10.41 -12.99 -0.14 -5.43 15 15 C -0.03 -0.33 11.04 -17.96 -0.20 -0.53 15 16 C 0.10 1.31 11.01 -16.22 -0.18 1.13 15 17 N -0.48 -8.61 2.95 -66.43 -0.20 -8.81 15 18 C 0.63 14.36 8.73 -87.04 -0.76 13.60 15 19 O -0.54 -13.68 17.88 5.02 0.09 -13.59 15 20 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.06 1.60 8.14 -51.93 -0.42 1.18 15 22 H 0.06 1.70 8.09 -51.93 -0.42 1.28 15 23 H 0.19 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.18 1.26 8.06 -52.48 -0.42 0.84 15 25 H 0.17 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 239.17 15.07 3.60 3.60 Total: -1.00 -32.75 239.17 -5.43 -38.19 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: -1.66 Total: -3.93 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -3.01 Total: 11.80 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.56 Total: -52.50 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.75 -5.43 -38.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085438905.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.008 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds