Wall clock time and date at job start Mon Mar 30 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99471 * 2 1 4 4 H 1.48501 * 109.47013 * 269.99887 * 3 2 1 5 5 H 1.48495 * 109.47227 * 30.00607 * 3 2 1 6 6 H 1.48499 * 109.46520 * 150.00587 * 3 2 1 7 7 C 1.37877 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00095 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99809 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.47057 * 59.99279 * 9 7 2 11 11 O 1.42901 * 109.46850 * 299.99683 * 9 7 2 12 12 C 1.50696 * 109.47181 * 179.97438 * 9 7 2 13 13 C 1.38293 * 120.11375 * 85.01732 * 12 9 7 14 14 C 1.37934 * 120.34618 * 179.83089 * 13 12 9 15 15 C 1.39282 * 120.24319 * 359.96010 * 14 13 12 16 16 C 1.38884 * 118.87810 * 0.37225 * 15 14 13 17 17 C 1.37741 * 120.78134 * 359.48106 * 16 15 14 18 18 C 1.51638 * 107.04617 * 179.44718 * 16 15 14 19 19 C 1.54706 * 101.95770 * 344.59228 * 18 16 15 20 20 O 1.36143 * 129.88949 * 180.99829 * 15 14 13 21 21 H 0.96995 * 120.00372 * 359.97438 * 1 2 3 22 22 H 0.96704 * 113.99889 * 299.99578 * 11 9 7 23 23 H 1.07991 * 119.82735 * 359.81614 * 13 12 9 24 24 H 1.08002 * 119.88046 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.01235 * 180.36358 * 17 16 15 26 26 H 1.09002 * 110.93994 * 102.77103 * 18 16 15 27 27 H 1.08997 * 110.93769 * 226.42283 * 18 16 15 28 28 H 1.09003 * 110.74785 * 143.62371 * 19 18 16 29 29 H 1.08994 * 110.75591 * 266.97977 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8753 -0.6802 0.8888 11 8 3.9874 -0.5201 -1.1680 12 6 4.0140 -2.6147 -0.0010 13 6 4.1469 -3.3037 -1.1926 14 6 4.6096 -4.6032 -1.1984 15 6 4.9480 -5.2326 -0.0029 16 6 4.8037 -4.5327 1.1879 17 6 4.3442 -3.2342 1.1911 18 6 5.2297 -5.4646 2.3057 19 6 5.2263 -6.8392 1.5959 20 8 5.4348 -6.4849 0.2171 21 1 -0.4850 0.8400 0.0004 22 1 3.7018 -0.9236 -1.9991 23 1 3.8869 -2.8221 -2.1235 24 1 4.7101 -5.1344 -2.1334 25 1 4.2423 -2.6996 2.1240 26 1 6.2283 -5.2132 2.6631 27 1 4.5094 -5.4468 3.1235 28 1 6.0405 -7.4648 1.9617 29 1 4.2661 -7.3385 1.7255 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085878799.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:35 Heat of formation + Delta-G solvation = -57.601465 kcal Electronic energy + Delta-G solvation = -14494.619796 eV Core-core repulsion = 11962.080054 eV Total energy + Delta-G solvation = -2532.539742 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72470 -37.79068 -35.35754 -32.41548 -32.29596 -30.28976 -28.82607 -26.89517 -23.39268 -22.73287 -21.57385 -20.04767 -17.48520 -17.04902 -16.36059 -15.92533 -15.46223 -14.85602 -13.86799 -13.74408 -13.13315 -12.97386 -12.71881 -12.53699 -12.36603 -12.23469 -11.62136 -11.60335 -11.19905 -10.82568 -10.48734 -10.27605 -9.91111 -9.32390 -8.75312 -8.71115 -8.41447 -7.48459 -6.18170 -4.31081 1.75917 1.88102 3.41138 3.44926 3.51125 3.57116 4.18616 4.44629 4.61664 4.77449 5.05447 5.11240 5.23223 5.43439 5.55934 5.67452 5.78183 5.80746 5.92456 5.95552 6.08204 6.41867 6.75421 6.82057 6.85570 7.00275 7.42146 7.46800 7.59053 8.23001 8.74418 8.92013 9.43354 10.91776 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050727 B = 0.007458 C = 0.007234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.841947 B = 3753.361609 C = 3869.430266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.083 3.917 3 Si 0.912 3.088 4 H -0.277 1.277 5 H -0.304 1.304 6 H -0.267 1.267 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.226 3.774 10 H 0.071 0.929 11 O -0.582 6.582 12 C -0.085 4.085 13 C -0.082 4.082 14 C -0.135 4.135 15 C 0.076 3.924 16 C -0.176 4.176 17 C -0.069 4.069 18 C -0.108 4.108 19 C 0.053 3.947 20 O -0.313 6.313 21 H 0.267 0.733 22 H 0.362 0.638 23 H 0.129 0.871 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.646 -9.412 2.229 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.122 4.122 3 Si 0.742 3.258 4 H -0.203 1.203 5 H -0.232 1.232 6 H -0.192 1.192 7 C -0.592 4.592 8 H 0.094 0.906 9 C 0.169 3.831 10 H 0.089 0.911 11 O -0.389 6.389 12 C -0.085 4.085 13 C -0.100 4.100 14 C -0.154 4.154 15 C 0.031 3.969 16 C -0.177 4.177 17 C -0.088 4.088 18 C -0.145 4.145 19 C -0.022 4.022 20 O -0.227 6.227 21 H 0.076 0.924 22 H 0.209 0.791 23 H 0.146 0.854 24 H 0.139 0.861 25 H 0.140 0.860 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.868 -9.094 2.535 13.656 hybrid contribution -0.108 0.396 -0.155 0.439 sum 9.760 -8.697 2.380 13.288 Atomic orbital electron populations 1.69948 1.06625 1.27592 1.48414 1.25033 0.94709 0.99887 0.92550 0.86264 0.79210 0.81651 0.78695 1.20275 1.23206 1.19223 1.21430 0.88861 0.95026 1.53934 0.90597 1.18965 0.93983 0.84145 0.86014 0.91108 1.86429 1.77654 1.58078 1.16720 1.20843 0.96346 0.99104 0.92248 1.20624 0.98009 0.92754 0.98601 1.20140 1.04364 0.95566 0.95285 1.19424 0.97683 0.84814 0.94936 1.20637 1.06618 0.96080 0.94325 1.20135 0.97645 0.92527 0.98452 1.21728 1.02544 0.92779 0.97446 1.23757 1.02214 0.96829 0.79438 1.86777 1.76498 1.30285 1.29182 0.92374 0.79073 0.85358 0.86139 0.86015 0.89673 0.89380 0.88201 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.90 15 2 C 0.08 2.36 5.47 -17.82 -0.10 2.26 15 3 Si 0.91 22.75 26.18 -169.99 -4.45 18.30 15 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 5 H -0.30 -7.53 7.11 56.52 0.40 -7.12 15 6 H -0.27 -6.57 6.54 56.52 0.37 -6.21 15 7 C -0.56 -15.25 9.33 -34.44 -0.32 -15.57 15 8 H 0.08 2.28 7.98 -52.49 -0.42 1.86 15 9 C 0.23 5.30 2.55 -29.04 -0.07 5.23 15 10 H 0.07 1.70 7.11 -51.93 -0.37 1.33 15 11 O -0.58 -13.11 10.83 -35.23 -0.38 -13.49 15 12 C -0.08 -1.75 4.95 -104.56 -0.52 -2.27 15 13 C -0.08 -1.52 9.31 -39.67 -0.37 -1.89 15 14 C -0.13 -2.33 10.06 -39.30 -0.40 -2.72 15 15 C 0.08 1.32 7.04 -38.95 -0.27 1.04 15 16 C -0.18 -2.99 6.27 -104.10 -0.65 -3.64 15 17 C -0.07 -1.31 9.67 -39.72 -0.38 -1.70 15 18 C -0.11 -1.35 7.11 -26.52 -0.19 -1.54 15 19 C 0.05 0.62 8.01 38.06 0.30 0.92 15 20 O -0.31 -4.93 11.11 -20.19 -0.22 -5.15 15 21 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 22 H 0.36 7.06 7.39 45.56 0.34 7.40 15 23 H 0.13 2.16 6.62 -52.49 -0.35 1.81 15 24 H 0.12 1.79 8.06 -52.49 -0.42 1.36 15 25 H 0.12 2.15 8.06 -52.49 -0.42 1.73 15 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 28 H 0.10 0.86 8.14 -51.93 -0.42 0.43 15 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 LS Contribution 248.71 15.07 3.75 3.75 Total: -1.00 -31.68 248.71 -6.01 -37.68 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.50 Total: 4.70 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.97 Total: -19.88 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.61 Total: -18.64 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.45 Total: 18.30 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.68 -6.01 -37.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085878799.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.917 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds