Wall clock time and date at job start Mon Mar 30 2020 03:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48492 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46795 * 299.99713 * 3 2 1 6 6 H 1.48495 * 109.47315 * 59.99337 * 3 2 1 7 7 C 1.38650 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00236 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99545 * 359.97438 * 7 2 1 10 10 C 1.35692 * 116.99780 * 185.05408 * 9 7 2 11 11 C 1.39036 * 119.92519 * 354.46029 * 10 9 7 12 12 C 1.37780 * 120.07031 * 179.74259 * 11 10 9 13 13 C 1.39635 * 119.92747 * 0.25228 * 12 11 10 14 14 C 1.47723 * 120.07505 * 179.97438 * 13 12 11 15 15 C 1.32647 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99771 * 179.97438 * 15 14 13 17 17 O 1.42902 * 109.46903 * 135.00119 * 16 15 14 18 18 C 1.39643 * 119.85717 * 359.97438 * 13 12 11 19 19 C 1.37780 * 119.92438 * 0.02562 * 18 13 12 20 20 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.96095 * 0.02562 * 11 10 9 22 22 H 1.07994 * 120.03186 * 180.26993 * 12 11 10 23 23 H 1.08002 * 119.99591 * 359.97438 * 14 13 12 24 24 H 1.07997 * 119.99785 * 0.02562 * 15 14 13 25 25 H 1.09001 * 109.47517 * 255.00267 * 16 15 14 26 26 H 1.09005 * 109.46961 * 15.00279 * 16 15 14 27 27 H 0.96703 * 113.99547 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.03933 * 179.97438 * 18 13 12 29 29 H 1.08002 * 119.96178 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3963 -1.2125 6 1 1.8909 2.3965 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3682 0.0016 10 6 2.0697 -3.5038 0.1086 11 6 3.4583 -3.4352 0.0945 12 6 4.2075 -4.5859 0.2083 13 6 3.5708 -5.8224 0.3325 14 6 4.3708 -7.0582 0.4541 15 6 3.7644 -8.2320 0.5725 16 6 4.5807 -9.4927 0.6960 17 8 4.0403 -10.3101 1.7362 18 6 2.1759 -5.8882 0.3415 19 6 1.4326 -4.7338 0.2273 20 1 -0.4850 0.8401 -0.0004 21 1 3.9501 -2.4784 -0.0011 22 1 5.2861 -4.5314 0.2017 23 1 5.4496 -7.0059 0.4466 24 1 2.6857 -8.2841 0.5796 25 1 4.5515 -10.0384 -0.2471 26 1 5.6126 -9.2354 0.9351 27 1 4.5175 -11.1401 1.8721 28 1 1.6804 -6.8430 0.4370 29 1 0.3537 -4.7839 0.2347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086209659.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:51 Heat of formation + Delta-G solvation = -41.108031 kcal Electronic energy + Delta-G solvation = -13631.715918 eV Core-core repulsion = 11099.891385 eV Total energy + Delta-G solvation = -2531.824533 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.07720 -37.32455 -36.55731 -33.47641 -32.25029 -30.29383 -28.84156 -25.77498 -24.77264 -22.24337 -21.15588 -19.32366 -17.91438 -17.46018 -16.86913 -15.64933 -14.83197 -14.58720 -14.21254 -13.98553 -13.67560 -13.26145 -12.95559 -12.55101 -12.16177 -11.71691 -11.65875 -11.37032 -11.08207 -10.77753 -10.50082 -10.42507 -10.30528 -9.39599 -9.36792 -8.73061 -8.25583 -6.97374 -6.52703 -4.09424 1.59812 2.21099 2.96414 3.09959 3.14949 3.16112 3.91096 4.34909 4.62730 5.03473 5.07000 5.18639 5.24621 5.37654 5.44523 5.65165 5.77892 5.85422 6.13417 6.28716 6.59439 6.75009 6.79036 6.93470 7.05131 7.24786 7.36638 7.42285 7.54342 7.76902 7.92653 8.92609 9.61729 10.64828 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.078004 B = 0.004930 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.871393 B = 5678.190509 C = 5969.126897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.171 6.171 10 C 0.160 3.840 11 C -0.238 4.238 12 C -0.052 4.052 13 C -0.172 4.172 14 C -0.061 4.061 15 C -0.204 4.204 16 C 0.115 3.885 17 O -0.572 6.572 18 C -0.058 4.058 19 C -0.195 4.195 20 H 0.271 0.729 21 H 0.129 0.871 22 H 0.110 0.890 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.375 0.625 28 H 0.116 0.884 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -11.475 0.312 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.166 4.166 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.105 3.895 11 C -0.257 4.257 12 C -0.070 4.070 13 C -0.173 4.173 14 C -0.079 4.079 15 C -0.222 4.222 16 C 0.038 3.962 17 O -0.377 6.377 18 C -0.076 4.076 19 C -0.214 4.214 20 H 0.081 0.919 21 H 0.147 0.853 22 H 0.128 0.872 23 H 0.125 0.875 24 H 0.134 0.866 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.221 0.779 28 H 0.134 0.866 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.836 -10.724 0.324 13.286 hybrid contribution 0.924 0.402 -0.095 1.012 sum 8.760 -10.323 0.229 13.540 Atomic orbital electron populations 1.70053 1.06020 1.27789 1.45366 1.25346 0.95890 0.98994 0.96372 0.85606 0.79140 0.80121 0.78328 1.19025 1.20055 1.20047 1.21436 0.91962 0.80726 1.52661 0.88788 1.83953 1.34624 1.11609 1.77202 1.19510 0.90305 0.87958 0.91756 1.21107 0.93730 0.99012 1.11846 1.20858 0.98311 0.91553 0.96311 1.18453 0.92891 0.92417 1.13553 1.21509 0.98084 0.91563 0.96743 1.22792 1.00302 0.92431 1.06635 1.21036 0.95218 0.90431 0.89565 1.86563 1.59183 1.35054 1.56895 1.20816 0.92837 0.96874 0.97085 1.20161 0.99685 0.90231 1.11315 0.91904 0.85322 0.87232 0.87486 0.86601 0.93301 0.93628 0.77907 0.86625 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 13.67 55.48 0.76 -24.17 15 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 15 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.23 15 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.39 -10.86 9.48 30.88 0.29 -10.56 15 8 H 0.09 2.40 5.19 -52.49 -0.27 2.13 15 9 O -0.17 -4.88 9.75 0.29 0.00 -4.88 15 10 C 0.16 3.88 6.65 -38.99 -0.26 3.62 15 11 C -0.24 -5.18 9.15 -39.45 -0.36 -5.54 15 12 C -0.05 -0.97 9.78 -39.23 -0.38 -1.36 15 13 C -0.17 -3.12 5.87 -104.98 -0.62 -3.74 15 14 C -0.06 -0.91 9.50 -37.60 -0.36 -1.27 15 15 C -0.20 -2.87 9.31 -36.20 -0.34 -3.21 15 16 C 0.11 1.28 7.47 36.01 0.27 1.54 15 17 O -0.57 -6.63 13.64 -35.23 -0.48 -7.11 15 18 C -0.06 -1.09 9.39 -39.22 -0.37 -1.46 15 19 C -0.19 -4.20 9.97 -39.46 -0.39 -4.59 15 20 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.13 2.77 5.62 -52.49 -0.29 2.48 15 22 H 0.11 1.70 8.06 -52.49 -0.42 1.28 15 23 H 0.11 1.36 7.92 -52.49 -0.42 0.94 15 24 H 0.12 1.72 6.03 -52.49 -0.32 1.40 15 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 15 26 H 0.05 0.44 7.88 -51.93 -0.41 0.03 15 27 H 0.37 2.30 9.12 45.56 0.42 2.72 15 28 H 0.12 1.88 6.16 -52.49 -0.32 1.56 15 29 H 0.12 2.46 8.06 -52.49 -0.42 2.03 15 LS Contribution 260.50 15.07 3.93 3.93 Total: -1.00 -31.52 260.50 -5.45 -36.96 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -2.02 Total: 5.64 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -2.61 Total: -25.60 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.48 Total: -11.99 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.52 -5.45 -36.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086209659.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.144 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds