Wall clock time and date at job start Mon Mar 30 2020 03:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86801 * 120.00225 * 2 1 4 4 H 1.48492 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46795 * 299.99713 * 3 2 1 6 6 H 1.48495 * 109.47315 * 59.99337 * 3 2 1 7 7 C 1.38650 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00236 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99545 * 359.97438 * 7 2 1 10 10 C 1.35692 * 116.99780 * 185.05408 * 9 7 2 11 11 C 1.39036 * 119.92519 * 354.46029 * 10 9 7 12 12 C 1.37780 * 120.07031 * 179.74259 * 11 10 9 13 13 C 1.39635 * 119.92747 * 0.25228 * 12 11 10 14 14 C 1.47723 * 120.07505 * 179.97438 * 13 12 11 15 15 C 1.32647 * 120.00158 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99771 * 179.97438 * 15 14 13 17 17 O 1.42902 * 109.46903 * 135.00119 * 16 15 14 18 18 C 1.39643 * 119.85717 * 359.97438 * 13 12 11 19 19 C 1.37780 * 119.92438 * 0.02562 * 18 13 12 20 20 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 21 21 H 1.08000 * 119.96095 * 0.02562 * 11 10 9 22 22 H 1.07994 * 120.03186 * 180.26993 * 12 11 10 23 23 H 1.08002 * 119.99591 * 359.97438 * 14 13 12 24 24 H 1.07997 * 119.99785 * 0.02562 * 15 14 13 25 25 H 1.09001 * 109.47517 * 255.00267 * 16 15 14 26 26 H 1.09005 * 109.46961 * 15.00279 * 16 15 14 27 27 H 0.96703 * 113.99547 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.03933 * 179.97438 * 18 13 12 29 29 H 1.08002 * 119.96178 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3963 -1.2125 6 1 1.8909 2.3965 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3682 0.0016 10 6 2.0697 -3.5038 0.1086 11 6 3.4583 -3.4352 0.0945 12 6 4.2075 -4.5859 0.2083 13 6 3.5708 -5.8224 0.3325 14 6 4.3708 -7.0582 0.4541 15 6 3.7644 -8.2320 0.5725 16 6 4.5807 -9.4927 0.6960 17 8 4.0403 -10.3101 1.7362 18 6 2.1759 -5.8882 0.3415 19 6 1.4326 -4.7338 0.2273 20 1 -0.4850 0.8401 -0.0004 21 1 3.9501 -2.4784 -0.0011 22 1 5.2861 -4.5314 0.2017 23 1 5.4496 -7.0059 0.4466 24 1 2.6857 -8.2841 0.5796 25 1 4.5515 -10.0384 -0.2471 26 1 5.6126 -9.2354 0.9351 27 1 4.5175 -11.1401 1.8721 28 1 1.6804 -6.8430 0.4370 29 1 0.3537 -4.7839 0.2347 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086209659.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:50 Heat of formation + Delta-G solvation = -63.627714 kcal Electronic energy + Delta-G solvation = -13632.692444 eV Core-core repulsion = 11099.891385 eV Total energy + Delta-G solvation = -2532.801059 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80368 -38.69869 -37.74917 -34.86054 -34.09252 -31.92496 -30.27582 -27.58809 -26.09219 -23.86173 -22.67153 -20.72416 -19.59079 -18.89487 -18.14624 -16.97595 -16.46008 -16.13618 -15.59470 -15.48063 -15.35147 -14.59269 -14.52664 -14.09847 -13.62970 -13.33253 -13.21378 -12.73976 -12.69879 -12.33158 -12.09657 -11.78476 -11.29014 -11.18098 -10.90253 -10.34840 -9.86935 -8.59123 -8.49795 -6.17123 0.17773 0.56580 1.35171 1.40119 1.53929 1.66983 2.16374 2.86760 3.18754 3.44298 3.53987 3.97963 4.08755 4.15915 4.29209 4.46914 4.51202 4.60595 4.68550 4.76487 4.99049 5.11126 5.22461 5.44778 5.53469 5.65253 5.73418 5.98193 6.00987 6.16866 6.94311 6.97764 7.73590 8.73131 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.078004 B = 0.004930 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.871393 B = 5678.190509 C = 5969.126897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.024 4.024 3 Si 1.022 2.978 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.415 4.415 8 H 0.105 0.895 9 O -0.228 6.228 10 C 0.118 3.882 11 C -0.243 4.243 12 C -0.053 4.053 13 C -0.149 4.149 14 C -0.082 4.082 15 C -0.183 4.183 16 C 0.112 3.888 17 O -0.596 6.596 18 C -0.062 4.062 19 C -0.206 4.206 20 H 0.274 0.726 21 H 0.125 0.875 22 H 0.150 0.850 23 H 0.139 0.861 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.399 0.601 28 H 0.143 0.857 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.781 -13.788 0.524 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.173 1.173 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.122 0.878 9 O -0.134 6.134 10 C 0.067 3.933 11 C -0.262 4.262 12 C -0.071 4.071 13 C -0.149 4.149 14 C -0.100 4.100 15 C -0.201 4.201 16 C 0.035 3.965 17 O -0.405 6.405 18 C -0.080 4.080 19 C -0.225 4.225 20 H 0.083 0.917 21 H 0.143 0.857 22 H 0.168 0.832 23 H 0.157 0.843 24 H 0.123 0.877 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.249 0.751 28 H 0.161 0.839 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.954 -13.122 0.542 17.101 hybrid contribution 0.097 0.565 -0.119 0.586 sum 11.051 -12.556 0.423 16.732 Atomic orbital electron populations 1.70197 1.08100 1.28875 1.48529 1.26662 0.96900 1.02896 0.95721 0.84482 0.78278 0.74569 0.78569 1.17289 1.19279 1.19368 1.21921 0.92680 0.81295 1.53163 0.87776 1.83925 1.36130 1.12683 1.80693 1.20034 0.91717 0.87838 0.93745 1.21250 0.92925 1.00282 1.11774 1.21255 1.00199 0.90469 0.95173 1.18977 0.92864 0.93935 1.09157 1.21566 0.99380 0.89976 0.99060 1.23166 1.00384 0.93813 1.02701 1.21101 0.95445 0.89267 0.90677 1.86485 1.60330 1.36667 1.56999 1.21158 0.93577 0.96885 0.96389 1.20382 1.00015 0.90547 1.11557 0.91742 0.85734 0.83215 0.84297 0.87687 0.91085 0.91398 0.75103 0.83912 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.60 13.67 21.61 0.30 -56.30 15 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 15 3 Si 1.02 42.70 29.55 68.60 2.03 44.72 15 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 7 C -0.41 -24.21 9.48 67.92 0.64 -23.56 15 8 H 0.10 5.55 5.19 -2.91 -0.02 5.53 15 9 O -0.23 -13.89 9.75 -21.87 -0.21 -14.10 15 10 C 0.12 5.98 6.65 22.65 0.15 6.13 15 11 C -0.24 -10.68 9.15 22.35 0.20 -10.47 15 12 C -0.05 -1.86 9.78 22.50 0.22 -1.64 15 13 C -0.15 -4.94 5.87 -20.09 -0.12 -5.06 15 14 C -0.08 -2.06 9.50 23.61 0.22 -1.84 15 15 C -0.18 -4.32 9.31 24.52 0.23 -4.10 15 16 C 0.11 1.91 7.47 71.24 0.53 2.44 15 17 O -0.60 -11.23 13.64 -148.98 -2.03 -13.27 15 18 C -0.06 -2.26 9.39 22.50 0.21 -2.05 15 19 C -0.21 -9.14 9.97 22.35 0.22 -8.91 15 20 H 0.27 15.35 8.31 -92.71 -0.77 14.57 15 21 H 0.12 5.47 5.62 -2.91 -0.02 5.45 15 22 H 0.15 4.01 8.06 -2.91 -0.02 3.98 15 23 H 0.14 2.68 7.92 -2.91 -0.02 2.66 15 24 H 0.11 2.72 6.03 -2.91 -0.02 2.70 15 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 15 26 H 0.07 0.91 7.88 -2.38 -0.02 0.89 15 27 H 0.40 3.19 9.12 -74.06 -0.68 2.51 15 28 H 0.14 4.33 6.16 -2.91 -0.02 4.31 15 29 H 0.11 5.02 8.06 -2.91 -0.02 5.00 15 Total: -1.00 -72.90 260.50 3.56 -69.34 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.50 Total: 19.58 kcal Atomic # 6 Polarization: -52.95 SS G_CDS: 2.99 Total: -49.96 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.30 Total: -56.30 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -2.25 Total: -27.37 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.90 3.56 -69.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086209659.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.711 kcal (2) G-P(sol) polarization free energy of solvation -72.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds