Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99963 * 2 1 4 4 C 1.38970 * 119.97609 * 0.02562 * 3 2 1 5 5 C 1.38332 * 120.25505 * 180.02562 * 4 3 2 6 6 C 1.37941 * 120.20884 * 359.97438 * 5 4 3 7 7 C 1.39758 * 119.95535 * 359.97438 * 6 5 4 8 8 C 1.47831 * 120.12815 * 179.97438 * 7 6 5 9 9 O 1.21768 * 119.99927 * 173.98329 * 8 7 6 10 10 C 1.41790 * 119.99740 * 353.98667 * 8 7 6 11 11 H 1.08002 * 120.00128 * 0.02562 * 10 8 7 12 12 C 1.40352 * 119.99811 * 179.97438 * 10 8 7 13 13 N 1.30531 * 120.00075 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00114 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.46983 * 59.99810 * 14 12 10 16 16 H 1.48500 * 109.47406 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47123 * 300.00262 * 14 12 10 18 18 C 1.38369 * 119.98024 * 180.02562 * 3 2 1 19 19 C 1.50697 * 120.10289 * 0.27773 * 18 3 2 20 20 H 1.09007 * 109.47161 * 59.99830 * 1 2 3 21 21 H 1.08998 * 109.46715 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46988 * 300.00066 * 1 2 3 23 23 H 1.08001 * 119.87691 * 0.02562 * 4 3 2 24 24 H 1.07995 * 119.89381 * 179.97438 * 5 4 3 25 25 H 1.08004 * 120.02293 * 179.97438 * 6 5 4 26 26 H 0.97001 * 119.99754 * 179.97438 * 13 12 10 27 27 H 1.09008 * 109.47040 * 262.90218 * 19 18 3 28 28 H 1.09003 * 109.47820 * 22.90035 * 19 18 3 29 29 H 1.08999 * 109.47571 * 142.90534 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2886 2.3761 0.0005 5 6 1.9106 3.6117 0.0000 6 6 3.2875 3.6956 -0.0005 7 6 4.0577 2.5294 0.0000 8 6 5.5335 2.6149 -0.0011 9 8 6.2021 1.6033 0.1099 10 6 6.1705 3.8750 -0.1314 11 1 5.5775 4.7723 -0.2294 12 6 7.5717 3.9562 -0.1320 13 7 8.2884 2.8718 -0.0130 14 14 8.4109 5.6163 -0.3029 15 1 8.0010 6.4962 0.8210 16 1 9.8841 5.4314 -0.2755 17 1 8.0148 6.2410 -1.5906 18 6 3.4278 1.2829 -0.0005 19 6 4.2504 0.0202 -0.0074 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2102 2.3168 0.0014 24 1 1.3163 4.5134 0.0000 25 1 3.7700 4.6619 -0.0014 26 1 9.2568 2.9279 -0.0138 27 1 4.5558 -0.2200 1.0110 28 1 3.6554 -0.7990 -0.4111 29 1 5.1352 0.1663 -0.6271 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086860335.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -77.978247 kcal Electronic energy + Delta-G solvation = -14508.463821 eV Core-core repulsion = 11975.040476 eV Total energy + Delta-G solvation = -2533.423345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.13884 -39.21217 -37.46003 -34.87927 -33.35051 -31.59204 -28.90050 -28.17302 -27.45692 -24.13607 -22.53525 -21.24802 -19.10284 -18.00192 -17.17858 -16.79784 -16.62677 -16.39533 -15.53903 -15.10992 -14.86938 -14.37804 -14.05893 -13.62441 -13.28792 -13.06382 -12.92697 -12.87305 -12.66337 -12.56277 -12.18159 -12.06053 -11.83447 -11.60601 -10.95816 -9.59354 -9.42497 -8.98826 -8.29458 -7.05357 0.19673 0.58140 1.38959 1.41500 1.54125 2.21514 2.24448 2.45520 2.87469 3.71985 3.95212 4.00977 4.28604 4.36904 4.43103 4.45391 4.56659 4.70336 4.76067 4.87991 4.91596 5.09753 5.20304 5.35761 5.46643 5.60240 5.79868 5.95112 6.00434 6.56191 6.71099 6.80854 8.26480 8.49834 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050434 B = 0.007837 C = 0.006824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.047044 B = 3571.776515 C = 4102.282513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.105 3.895 4 C -0.198 4.198 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.113 4.113 8 C 0.360 3.640 9 O -0.576 6.576 10 C -0.542 4.542 11 H 0.094 0.906 12 C 0.023 3.977 13 N -0.786 5.786 14 Si 0.996 3.004 15 H -0.251 1.251 16 H -0.270 1.270 17 H -0.252 1.252 18 C -0.119 4.119 19 C -0.085 4.085 20 H 0.066 0.934 21 H 0.118 0.882 22 H 0.066 0.934 23 H 0.163 0.837 24 H 0.163 0.837 25 H 0.133 0.867 26 H 0.282 0.718 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 2.504 -0.546 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.060 3.940 4 C -0.216 4.216 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.114 4.114 8 C 0.260 3.740 9 O -0.469 6.469 10 C -0.572 4.572 11 H 0.112 0.888 12 C -0.196 4.196 13 N -0.415 5.415 14 Si 0.814 3.186 15 H -0.175 1.175 16 H -0.195 1.195 17 H -0.176 1.176 18 C -0.120 4.120 19 C -0.142 4.142 20 H 0.085 0.915 21 H 0.136 0.864 22 H 0.084 0.916 23 H 0.181 0.819 24 H 0.180 0.820 25 H 0.151 0.849 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.129 1.696 -0.479 13.247 hybrid contribution 0.514 0.458 0.001 0.689 sum -12.615 2.154 -0.478 12.806 Atomic orbital electron populations 1.23362 0.76447 1.05488 1.02353 1.86037 1.23489 1.26513 1.89038 1.18811 0.90880 0.85553 0.98774 1.21601 1.01019 0.91269 1.07726 1.21261 0.93519 0.98334 0.97873 1.21552 0.94386 0.97781 1.01564 1.21348 0.98015 0.93069 0.99004 1.18818 0.85975 0.90336 0.78918 1.90400 1.67121 1.38801 1.50624 1.21412 0.93017 0.95825 1.46949 0.88766 1.27258 0.98363 1.02532 0.91399 1.70092 1.07485 1.32340 1.31591 0.85095 0.76874 0.76050 0.80576 1.17476 1.19491 1.17568 1.19653 0.91728 0.95796 1.04822 1.20500 0.98726 0.93690 1.01271 0.91514 0.86361 0.91568 0.81939 0.81959 0.84917 0.90766 0.93634 0.91896 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 15 2 O -0.34 -10.98 9.42 -92.48 -0.87 -11.85 15 3 C 0.10 3.93 6.65 22.48 0.15 4.08 15 4 C -0.20 -5.96 9.04 22.47 0.20 -5.75 15 5 C -0.09 -2.87 10.03 22.22 0.22 -2.64 15 6 C -0.13 -5.46 9.43 22.57 0.21 -5.25 15 7 C -0.11 -5.69 5.88 -20.03 -0.12 -5.80 15 8 C 0.36 21.57 6.85 25.69 0.18 21.74 15 9 O -0.58 -38.34 11.90 -4.56 -0.05 -38.39 15 10 C -0.54 -30.57 8.85 23.66 0.21 -30.36 15 11 H 0.09 4.72 6.07 -2.91 -0.02 4.70 15 12 C 0.02 1.28 5.50 85.40 0.47 1.74 15 13 N -0.79 -46.75 11.73 21.89 0.26 -46.49 15 14 Si 1.00 39.37 29.56 68.60 2.03 41.40 15 15 H -0.25 -9.31 7.11 99.48 0.71 -8.61 15 16 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 17 H -0.25 -9.38 7.11 99.48 0.71 -8.67 15 18 C -0.12 -5.58 5.93 -19.49 -0.12 -5.70 15 19 C -0.09 -4.12 8.56 71.23 0.61 -3.51 15 20 H 0.07 1.10 7.66 -2.38 -0.02 1.08 15 21 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.07 1.10 7.66 -2.38 -0.02 1.08 15 23 H 0.16 3.39 6.28 -2.91 -0.02 3.37 15 24 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 25 H 0.13 5.14 6.24 -2.91 -0.02 5.12 15 26 H 0.28 15.02 8.29 -92.71 -0.77 14.25 15 27 H 0.04 2.24 8.14 -2.38 -0.02 2.22 15 28 H 0.06 2.64 7.33 -2.39 -0.02 2.63 15 29 H 0.06 3.39 5.89 -2.39 -0.01 3.37 15 Total: -1.00 -74.78 250.22 5.66 -69.12 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.17 Total: 16.21 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 3.13 Total: -30.00 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.26 Total: -46.49 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -0.93 Total: -50.24 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -74.78 5.66 -69.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086860335.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.858 kcal (2) G-P(sol) polarization free energy of solvation -74.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds