Wall clock time and date at job start Mon Mar 30 2020 03:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 110.49329 * 2 1 4 4 O 1.43951 * 110.54740 * 122.70742 * 2 1 3 5 5 C 1.36328 * 105.56196 * 91.26460 * 4 2 1 6 6 C 1.39202 * 131.31974 * 197.69158 * 5 4 2 7 7 C 1.36431 * 120.44349 * 180.18744 * 6 5 4 8 8 C 1.40850 * 120.04133 * 359.49301 * 7 6 5 9 9 C 1.41201 * 120.17669 * 180.26625 * 8 7 6 10 10 H 1.08005 * 119.99736 * 24.54142 * 9 8 7 11 11 C 1.39866 * 120.00261 * 204.54584 * 9 8 7 12 12 N 1.30892 * 119.99903 * 17.93287 * 11 9 8 13 13 Si 1.86800 * 120.00229 * 197.92826 * 11 9 8 14 14 H 1.48507 * 109.46846 * 90.00006 * 13 11 9 15 15 H 1.48500 * 109.47336 * 209.99729 * 13 11 9 16 16 H 1.48501 * 109.46820 * 330.00041 * 13 11 9 17 17 C 1.40791 * 119.65102 * 0.24566 * 8 7 6 18 18 C 1.37784 * 119.69468 * 0.02562 * 17 8 7 19 19 O 1.36495 * 131.47241 * 180.02562 * 18 17 8 20 20 H 1.08997 * 109.47271 * 297.99657 * 1 2 3 21 21 H 1.09000 * 109.46407 * 57.99201 * 1 2 3 22 22 H 1.08998 * 109.46856 * 177.98594 * 1 2 3 23 23 H 1.09000 * 109.46561 * 182.00730 * 3 2 1 24 24 H 1.08998 * 109.46977 * 302.00703 * 3 2 1 25 25 H 1.08998 * 109.47080 * 62.00999 * 3 2 1 26 26 H 1.07999 * 119.77816 * 359.95666 * 6 5 4 27 27 H 1.07997 * 119.97591 * 179.77471 * 7 6 5 28 28 H 0.96997 * 120.00065 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.15330 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0657 1.4332 0.0000 4 8 2.0353 -0.7284 1.1342 5 6 2.1908 -2.0127 0.7043 6 6 2.3295 -3.2066 1.4067 7 6 2.4778 -4.3876 0.7399 8 6 2.4808 -4.4067 -0.6684 9 6 2.6284 -5.6281 -1.3614 10 1 2.3489 -6.5563 -0.8852 11 6 3.1368 -5.6359 -2.6644 12 7 3.7945 -4.5985 -3.1165 13 14 2.8774 -7.1270 -3.7593 14 1 1.6117 -6.9684 -4.5197 15 1 4.0132 -7.2479 -4.7083 16 1 2.8010 -8.3499 -2.9202 17 6 2.3353 -3.2016 -1.3817 18 6 2.1920 -2.0154 -0.6955 19 8 2.0365 -0.7315 -1.1322 20 1 -0.3633 0.4824 0.9074 21 1 -0.3632 0.5447 -0.8715 22 1 -0.3633 -1.0270 -0.0361 23 1 3.1549 1.4139 -0.0360 24 1 1.6827 1.9642 -0.8714 25 1 1.7411 1.9424 0.9074 26 1 2.3233 -3.1974 2.4866 27 1 2.5884 -5.3089 1.2924 28 1 4.1467 -4.6037 -4.0202 29 1 2.3368 -3.2068 -2.4616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104470577.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:57 Heat of formation + Delta-G solvation = -71.010302 kcal Electronic energy + Delta-G solvation = -14784.987503 eV Core-core repulsion = 12251.866310 eV Total energy + Delta-G solvation = -2533.121192 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.75003 -38.60837 -36.81913 -35.44038 -33.54261 -31.11708 -30.23212 -28.51382 -26.75787 -23.29721 -23.05946 -22.52432 -19.63592 -18.39283 -17.95841 -17.24265 -16.60094 -16.18723 -15.41952 -15.15270 -14.56312 -14.40106 -13.85320 -13.76133 -13.46795 -13.36866 -13.27949 -13.10411 -12.98435 -12.80382 -12.66236 -12.35695 -11.84413 -11.50467 -11.48084 -10.89951 -9.39007 -8.90440 -8.60450 -6.37617 0.72812 0.91734 1.40255 1.49979 1.55076 2.18703 2.19967 2.61807 2.79805 3.56218 3.70750 3.77166 4.10944 4.39482 4.49813 4.57038 4.63521 4.75145 4.81797 4.90685 4.95855 5.11408 5.14783 5.25173 5.37017 5.71070 5.77246 5.90789 6.03441 6.34040 6.64908 6.83017 6.90935 8.26706 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.047471 B = 0.008183 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.692892 B = 3420.943343 C = 3741.686555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.233 3.767 3 C -0.135 4.135 4 O -0.322 6.322 5 C -0.121 4.121 6 C -0.065 4.065 7 C -0.229 4.229 8 C 0.094 3.906 9 C -0.483 4.483 10 H 0.093 0.907 11 C 0.032 3.968 12 N -0.822 5.822 13 Si 0.990 3.010 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.251 1.251 17 C -0.183 4.183 18 C 0.040 3.960 19 O -0.334 6.334 20 H 0.103 0.897 21 H 0.097 0.903 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.291 0.709 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 5.108 2.207 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.159 3.841 3 C -0.192 4.192 4 O -0.241 6.241 5 C -0.165 4.165 6 C -0.083 4.083 7 C -0.248 4.248 8 C 0.092 3.908 9 C -0.511 4.511 10 H 0.111 0.889 11 C -0.184 4.184 12 N -0.448 5.448 13 Si 0.809 3.191 14 H -0.188 1.188 15 H -0.194 1.194 16 H -0.174 1.174 17 C -0.204 4.204 18 C -0.004 4.004 19 O -0.252 6.252 20 H 0.122 0.878 21 H 0.115 0.885 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.101 0.899 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.202 5.421 2.017 7.149 hybrid contribution 0.120 -0.422 -0.653 0.786 sum -4.082 5.000 1.364 6.597 Atomic orbital electron populations 1.22485 0.92221 1.02971 1.05375 1.24876 0.94580 0.92590 0.72076 1.21923 1.02097 0.89446 1.05737 1.87092 1.83265 1.17506 1.36239 1.19566 1.19803 0.85799 0.91327 1.19583 1.01263 0.88317 0.99178 1.20758 1.13482 0.96859 0.93709 1.17680 0.88611 0.92536 0.91998 1.19850 1.37970 0.94087 0.99189 0.88897 1.26934 0.91242 1.00822 0.99368 1.69933 1.24234 1.32314 1.18277 0.85089 0.78888 0.77578 0.77502 1.18751 1.19401 1.17384 1.20260 1.11861 0.88801 0.99430 1.19910 1.02949 0.84970 0.92543 1.87244 1.82323 1.17965 1.37680 0.87829 0.88470 0.93888 0.92112 0.87881 0.87322 0.85126 0.85431 0.89874 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.34 9.19 71.98 0.66 -4.68 15 2 C 0.23 8.82 1.61 30.60 0.05 8.87 15 3 C -0.14 -3.68 9.39 71.98 0.68 -3.01 15 4 O -0.32 -14.27 10.80 -74.05 -0.80 -15.07 15 5 C -0.12 -6.01 7.00 22.93 0.16 -5.85 15 6 C -0.06 -3.02 9.99 22.08 0.22 -2.80 15 7 C -0.23 -11.17 9.73 22.49 0.22 -10.95 15 8 C 0.09 5.17 5.57 -21.29 -0.12 5.05 15 9 C -0.48 -25.41 9.04 23.39 0.21 -25.20 15 10 H 0.09 4.55 7.91 -2.91 -0.02 4.53 15 11 C 0.03 1.60 5.13 85.23 0.44 2.04 15 12 N -0.82 -43.65 10.96 21.81 0.24 -43.41 15 13 Si 0.99 37.24 29.60 68.60 2.03 39.27 15 14 H -0.26 -9.66 7.11 99.48 0.71 -8.96 15 15 H -0.27 -9.71 7.11 99.48 0.71 -9.00 15 16 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 17 C -0.18 -10.35 8.70 22.79 0.20 -10.15 15 18 C 0.04 2.13 6.92 22.59 0.16 2.29 15 19 O -0.33 -16.02 10.82 -76.00 -0.82 -16.84 15 20 H 0.10 2.54 8.14 -2.39 -0.02 2.53 15 21 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.04 1.54 7.93 -2.39 -0.02 1.52 15 23 H 0.06 1.78 8.14 -2.39 -0.02 1.77 15 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 25 H 0.11 2.29 8.14 -2.39 -0.02 2.28 15 26 H 0.13 5.13 8.06 -2.91 -0.02 5.11 15 27 H 0.13 5.55 8.06 -2.91 -0.02 5.52 15 28 H 0.29 13.92 8.30 -92.71 -0.77 13.15 15 29 H 0.11 6.35 6.16 -2.91 -0.02 6.33 15 Total: -1.00 -63.87 252.89 4.67 -59.20 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.15 Total: 21.25 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 2.87 Total: -44.40 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.24 Total: -43.41 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.62 Total: -31.91 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -63.87 4.67 -59.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104470577.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.808 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds