Wall clock time and date at job start Mon Mar 30 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39910 * 120.16775 * 260.27774 * 3 2 1 5 5 F 1.35104 * 120.10956 * 359.97268 * 4 3 2 6 6 C 1.38240 * 119.77785 * 179.72218 * 4 3 2 7 7 C 1.38282 * 120.12216 * 0.55590 * 6 4 3 8 8 C 1.38400 * 120.34316 * 359.71999 * 7 6 4 9 9 C 1.37906 * 120.22276 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.06655 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47544 * 144.97715 * 10 9 8 12 12 N 1.46898 * 109.47199 * 24.97437 * 10 9 8 13 13 C 1.50704 * 109.46919 * 264.97591 * 10 9 8 14 14 H 1.07999 * 119.99794 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99943 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00284 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99909 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.47195 * 60.00093 * 17 15 13 19 19 H 1.48500 * 109.46995 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47340 * 300.00314 * 17 15 13 21 21 H 1.07994 * 119.94028 * 180.25378 * 6 4 3 22 22 H 1.08000 * 119.82566 * 179.74097 * 7 6 4 23 23 H 1.08001 * 119.88370 * 179.97438 * 8 7 6 24 24 H 1.00901 * 110.99998 * 176.05039 * 12 10 9 25 25 H 1.00901 * 111.00077 * 300.00705 * 12 10 9 26 26 H 0.96996 * 120.00340 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.2052 1.1922 5 9 2.6010 0.4036 2.3486 6 6 4.6533 0.1985 1.1839 7 6 5.3393 0.0018 -0.0005 8 6 4.6490 -0.1954 -1.1838 9 6 3.2699 -0.1966 -1.1910 10 6 2.5218 -0.4122 -2.4813 11 1 1.6109 -0.9771 -2.2833 12 7 3.3686 -1.1616 -3.4189 13 6 2.1644 0.9222 -3.0837 14 1 2.4508 1.8350 -2.5824 15 6 1.4728 0.9777 -4.2751 16 7 1.1246 -0.1338 -4.8858 17 14 1.0304 2.6317 -5.0221 18 1 2.2718 3.4011 -5.2917 19 1 0.2932 2.4193 -6.2936 20 1 0.1743 3.3897 -4.0747 21 1 5.1986 0.3521 2.1034 22 1 6.4193 0.0016 -0.0022 23 1 5.1922 -0.3479 -2.1047 24 1 2.8670 -1.3749 -4.2680 25 1 4.2201 -0.6584 -3.6187 26 1 0.6384 -0.0948 -5.7241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104498272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:57 Heat of formation + Delta-G solvation = 2.852686 kcal Electronic energy + Delta-G solvation = -14155.758928 eV Core-core repulsion = 11534.673121 eV Total energy + Delta-G solvation = -2621.085807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.72434 -39.05415 -35.76909 -34.83189 -31.82120 -30.84869 -29.28266 -26.21309 -23.78350 -23.11003 -20.38172 -18.52201 -16.81024 -16.51279 -16.30598 -15.44265 -14.99626 -14.70083 -14.12149 -13.36069 -13.22694 -12.84449 -12.77069 -12.31251 -12.18383 -11.80200 -11.61727 -11.22134 -11.14931 -10.86567 -10.78829 -10.17587 -9.84852 -8.82740 -8.51132 -8.27227 -7.40568 -6.23045 -4.40241 1.09333 1.58893 3.18579 3.24226 3.27282 3.31256 3.44930 4.18453 4.31005 4.33708 4.48601 4.97865 5.05908 5.35844 5.50064 5.63973 6.06811 6.23410 6.29464 6.40230 6.72543 6.75083 7.13750 7.40834 7.61211 7.86014 8.13161 8.47719 8.73687 8.92128 9.32249 10.76180 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.030661 B = 0.009920 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.979193 B = 2821.802672 C = 3181.512399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.269 3.731 3 C -0.070 4.070 4 C 0.136 3.864 5 F -0.138 7.138 6 C -0.181 4.181 7 C -0.068 4.068 8 C -0.124 4.124 9 C 0.047 3.953 10 C 0.234 3.766 11 H 0.055 0.945 12 N -0.848 5.848 13 C -0.550 4.550 14 H 0.058 0.942 15 C 0.071 3.929 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.275 1.275 21 H 0.135 0.865 22 H 0.132 0.868 23 H 0.140 0.860 24 H 0.360 0.640 25 H 0.314 0.686 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 0.320 6.997 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.046 4.046 3 C -0.075 4.075 4 C 0.115 3.885 5 F -0.116 7.116 6 C -0.200 4.200 7 C -0.087 4.087 8 C -0.142 4.142 9 C 0.044 3.956 10 C 0.123 3.877 11 H 0.073 0.927 12 N -0.379 5.379 13 C -0.590 4.590 14 H 0.077 0.923 15 C -0.132 4.132 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 H 0.153 0.847 22 H 0.150 0.850 23 H 0.157 0.843 24 H 0.177 0.823 25 H 0.124 0.876 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.313 -0.331 7.433 10.433 hybrid contribution -0.177 1.845 -0.902 2.062 sum 7.137 1.515 6.531 9.792 Atomic orbital electron populations 1.81081 1.12003 1.08652 1.07640 1.25121 0.92292 0.93824 0.93348 1.15925 0.85368 1.12547 0.93626 1.17598 0.90124 1.00678 0.80149 1.91487 1.80901 1.92307 1.46944 1.20831 0.91234 1.07826 1.00127 1.21170 1.00072 0.95793 0.91635 1.21033 0.93429 1.01179 0.98594 1.20583 0.93781 0.87151 0.94131 1.18107 0.91065 0.93433 0.85051 0.92742 1.59563 1.09022 1.48507 1.20824 1.21611 1.37939 0.92454 1.06957 0.92330 1.24988 0.94382 0.97095 0.96782 1.69709 1.38863 1.26528 1.17607 0.86519 0.78806 0.83554 0.78450 1.19932 1.20991 1.20050 0.84698 0.85023 0.84274 0.82261 0.87583 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.79 18.54 41.83 0.78 -9.01 15 2 C 0.27 5.90 13.54 -22.47 -0.30 5.59 15 3 C -0.07 -1.35 5.74 -106.82 -0.61 -1.97 15 4 C 0.14 2.23 7.28 -38.96 -0.28 1.94 15 5 F -0.14 -2.27 16.81 2.25 0.04 -2.23 15 6 C -0.18 -2.38 10.01 -39.56 -0.40 -2.77 15 7 C -0.07 -0.86 10.04 -39.51 -0.40 -1.26 15 8 C -0.12 -1.97 9.26 -39.64 -0.37 -2.34 15 9 C 0.05 0.92 5.03 -104.22 -0.52 0.40 15 10 C 0.23 5.49 2.46 -70.02 -0.17 5.32 15 11 H 0.05 1.47 7.28 -51.93 -0.38 1.10 15 12 N -0.85 -18.44 8.79 -6.65 -0.06 -18.50 15 13 C -0.55 -14.18 8.71 -34.44 -0.30 -14.48 15 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 15 C 0.07 1.87 5.38 -17.82 -0.10 1.78 15 16 N -0.89 -23.95 11.54 55.43 0.64 -23.31 15 17 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 15 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 21 H 0.14 1.36 8.06 -52.49 -0.42 0.93 15 22 H 0.13 1.19 8.06 -52.49 -0.42 0.76 15 23 H 0.14 2.06 6.28 -52.49 -0.33 1.73 15 24 H 0.36 8.59 7.08 -39.29 -0.28 8.31 15 25 H 0.31 6.20 7.20 -39.29 -0.28 5.91 15 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 243.98 15.07 3.68 3.68 Total: -1.00 -27.83 243.98 -5.06 -32.89 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -1.66 Total: 8.54 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -3.45 Total: -7.78 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 1.36 Total: -50.82 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.83 -5.06 -32.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104498272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.744 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds