Wall clock time and date at job start Mon Mar 30 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39910 * 120.16775 * 260.27774 * 3 2 1 5 5 F 1.35104 * 120.10956 * 359.97268 * 4 3 2 6 6 C 1.38240 * 119.77785 * 179.72218 * 4 3 2 7 7 C 1.38282 * 120.12216 * 0.55590 * 6 4 3 8 8 C 1.38400 * 120.34316 * 359.71999 * 7 6 4 9 9 C 1.37906 * 120.22276 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.06655 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.47544 * 144.97715 * 10 9 8 12 12 N 1.46898 * 109.47199 * 24.97437 * 10 9 8 13 13 C 1.50704 * 109.46919 * 264.97591 * 10 9 8 14 14 H 1.07999 * 119.99794 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99943 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00284 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99909 * 180.02562 * 15 13 10 18 18 H 1.48507 * 109.47195 * 60.00093 * 17 15 13 19 19 H 1.48500 * 109.46995 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47340 * 300.00314 * 17 15 13 21 21 H 1.07994 * 119.94028 * 180.25378 * 6 4 3 22 22 H 1.08000 * 119.82566 * 179.74097 * 7 6 4 23 23 H 1.08001 * 119.88370 * 179.97438 * 8 7 6 24 24 H 1.00901 * 110.99998 * 176.05039 * 12 10 9 25 25 H 1.00901 * 111.00077 * 300.00705 * 12 10 9 26 26 H 0.96996 * 120.00340 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2710 0.2052 1.1922 5 9 2.6010 0.4036 2.3486 6 6 4.6533 0.1985 1.1839 7 6 5.3393 0.0018 -0.0005 8 6 4.6490 -0.1954 -1.1838 9 6 3.2699 -0.1966 -1.1910 10 6 2.5218 -0.4122 -2.4813 11 1 1.6109 -0.9771 -2.2833 12 7 3.3686 -1.1616 -3.4189 13 6 2.1644 0.9222 -3.0837 14 1 2.4508 1.8350 -2.5824 15 6 1.4728 0.9777 -4.2751 16 7 1.1246 -0.1338 -4.8858 17 14 1.0304 2.6317 -5.0221 18 1 2.2718 3.4011 -5.2917 19 1 0.2932 2.4193 -6.2936 20 1 0.1743 3.3897 -4.0747 21 1 5.1986 0.3521 2.1034 22 1 6.4193 0.0016 -0.0022 23 1 5.1922 -0.3479 -2.1047 24 1 2.8670 -1.3749 -4.2680 25 1 4.2201 -0.6584 -3.6187 26 1 0.6384 -0.0948 -5.7241 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104498272.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:57 Heat of formation + Delta-G solvation = -15.418037 kcal Electronic energy + Delta-G solvation = -14156.551206 eV Core-core repulsion = 11534.673121 eV Total energy + Delta-G solvation = -2621.878085 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.99933 -40.41385 -37.44449 -36.56875 -33.63706 -32.22881 -30.69162 -28.09195 -25.30801 -24.51693 -21.90885 -19.93229 -18.70514 -17.92558 -17.67741 -16.74978 -16.68175 -16.19284 -15.59793 -15.00183 -14.77558 -14.58969 -14.31113 -13.97378 -13.66608 -13.47581 -13.17060 -12.90885 -12.74731 -12.52171 -12.37492 -12.01272 -11.53702 -10.78577 -9.86821 -9.57992 -9.24770 -8.19638 -6.44902 -0.23182 0.34828 1.33365 1.36462 1.42843 1.63520 1.96409 2.31153 2.85303 2.92278 2.98475 3.14596 3.83976 4.16722 4.31699 4.40544 4.65683 4.81796 4.92207 5.15795 5.27158 5.47887 5.59093 5.72125 5.89349 5.97907 6.46008 6.57226 6.83170 7.09966 7.32608 8.75433 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.030661 B = 0.009920 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.979193 B = 2821.802672 C = 3181.512399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.277 3.723 3 C -0.101 4.101 4 C 0.132 3.868 5 F -0.141 7.141 6 C -0.156 4.156 7 C -0.038 4.038 8 C -0.126 4.126 9 C 0.019 3.981 10 C 0.239 3.761 11 H 0.005 0.995 12 N -0.836 5.836 13 C -0.558 4.558 14 H 0.052 0.948 15 C 0.025 3.975 16 N -0.913 5.913 17 Si 0.953 3.047 18 H -0.259 1.259 19 H -0.281 1.281 20 H -0.286 1.286 21 H 0.181 0.819 22 H 0.187 0.813 23 H 0.150 0.850 24 H 0.348 0.652 25 H 0.328 0.672 26 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.489 1.111 8.102 14.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.037 4.037 3 C -0.106 4.106 4 C 0.111 3.889 5 F -0.120 7.120 6 C -0.174 4.174 7 C -0.056 4.056 8 C -0.144 4.144 9 C 0.016 3.984 10 C 0.128 3.872 11 H 0.023 0.977 12 N -0.366 5.366 13 C -0.598 4.598 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.778 3.222 18 H -0.183 1.183 19 H -0.206 1.206 20 H -0.212 1.212 21 H 0.198 0.802 22 H 0.204 0.796 23 H 0.167 0.833 24 H 0.162 0.838 25 H 0.139 0.861 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.615 0.465 8.548 13.637 hybrid contribution -1.087 1.574 -1.162 2.238 sum 9.528 2.039 7.386 12.227 Atomic orbital electron populations 1.81040 1.13396 1.10801 1.09142 1.25850 0.93253 0.92542 0.92074 1.16141 0.83889 1.15288 0.95262 1.17811 0.91343 1.00842 0.78935 1.91483 1.81347 1.92331 1.46800 1.21388 0.89446 1.04396 1.02177 1.21715 1.02472 0.91825 0.89579 1.21237 0.91621 1.00770 1.00764 1.20269 0.95399 0.90463 0.92306 1.17792 0.90377 0.91630 0.87402 0.97744 1.59494 1.09002 1.48290 1.19834 1.21893 1.37612 0.93377 1.06901 0.92997 1.25693 0.94590 0.99830 0.97457 1.69815 1.39545 1.27982 1.17865 0.85686 0.78823 0.80228 0.77414 1.18312 1.20643 1.21219 0.80205 0.79593 0.83265 0.83762 0.86103 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -23.09 18.54 19.00 0.35 -22.73 15 2 C 0.28 12.64 13.54 88.33 1.20 13.84 15 3 C -0.10 -3.90 5.74 -21.29 -0.12 -4.02 15 4 C 0.13 4.00 7.28 22.68 0.17 4.17 15 5 F -0.14 -4.39 16.81 44.97 0.76 -3.64 15 6 C -0.16 -3.21 10.01 22.28 0.22 -2.99 15 7 C -0.04 -0.72 10.04 22.32 0.22 -0.50 15 8 C -0.13 -3.59 9.26 22.23 0.21 -3.38 15 9 C 0.02 0.74 5.03 -19.60 -0.10 0.64 15 10 C 0.24 11.53 2.46 43.42 0.11 11.63 15 11 H 0.00 0.27 7.28 -2.39 -0.02 0.25 15 12 N -0.84 -36.69 8.79 -174.96 -1.54 -38.22 15 13 C -0.56 -29.37 8.71 25.60 0.22 -29.15 15 14 H 0.05 2.73 7.74 -2.91 -0.02 2.71 15 15 C 0.03 1.35 5.38 84.65 0.46 1.81 15 16 N -0.91 -50.53 11.54 21.45 0.25 -50.28 15 17 Si 0.95 42.97 29.54 68.60 2.03 44.99 15 18 H -0.26 -10.94 7.11 99.48 0.71 -10.24 15 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 20 H -0.29 -13.31 7.11 99.48 0.71 -12.61 15 21 H 0.18 2.23 8.06 -2.91 -0.02 2.21 15 22 H 0.19 1.74 8.06 -2.91 -0.02 1.72 15 23 H 0.15 3.91 6.28 -2.91 -0.02 3.89 15 24 H 0.35 16.96 7.08 -89.69 -0.63 16.32 15 25 H 0.33 12.66 7.20 -89.69 -0.65 12.02 15 26 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 Total: -1.00 -64.19 243.98 4.39 -59.80 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.04 Total: 18.03 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 2.58 Total: -7.95 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -0.94 Total: -111.24 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.76 Total: -3.64 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -64.19 4.39 -59.80 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104498272.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.383 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds