Wall clock time and date at job start Mon Mar 30 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39623 * 120.13951 * 80.55563 * 3 2 1 5 5 C 1.38157 * 119.82079 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.95187 * 179.97438 * 5 4 3 7 7 C 1.38604 * 120.09525 * 0.02562 * 5 4 3 8 8 C 1.38300 * 120.28189 * 359.97438 * 7 5 4 9 9 C 1.50700 * 119.90886 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.47217 * 160.00113 * 9 8 7 11 11 N 1.46904 * 109.46931 * 40.00229 * 9 8 7 12 12 C 1.50696 * 109.47376 * 280.00793 * 9 8 7 13 13 H 1.08003 * 119.99967 * 359.97438 * 12 9 8 14 14 C 1.37876 * 120.00121 * 180.02562 * 12 9 8 15 15 N 1.31521 * 120.00170 * 179.97438 * 14 12 9 16 16 Si 1.86797 * 120.00026 * 359.97438 * 14 12 9 17 17 H 1.48501 * 109.47527 * 90.00164 * 16 14 12 18 18 H 1.48501 * 109.47215 * 209.99960 * 16 14 12 19 19 H 1.48496 * 109.47082 * 329.99639 * 16 14 12 20 20 C 1.37973 * 120.17948 * 359.72653 * 8 7 5 21 21 H 1.08003 * 120.08740 * 359.97438 * 4 3 2 22 22 H 1.08004 * 119.85427 * 180.02562 * 7 5 4 23 23 H 1.00896 * 111.00121 * 300.00083 * 11 9 8 24 24 H 1.00901 * 111.00049 * 63.95457 * 11 9 8 25 25 H 0.96994 * 120.00107 * 179.97438 * 15 14 12 26 26 H 1.08000 * 120.05191 * 180.29983 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.1972 -1.1911 5 6 4.6507 -0.1958 -1.1834 6 9 5.3318 -0.3875 -2.3343 7 6 5.3389 0.0008 0.0035 8 6 4.6486 0.1972 1.1857 9 6 5.4054 0.4108 2.4712 10 1 4.7528 0.8884 3.2020 11 7 6.5687 1.2712 2.2174 12 6 5.8712 -0.9186 3.0067 13 1 5.6419 -1.8273 2.4701 14 6 6.5894 -0.9748 4.1823 15 7 6.9956 -2.1350 4.6500 16 14 6.9855 0.5968 5.1109 17 1 5.8980 0.8871 6.0796 18 1 8.2676 0.4304 5.8416 19 1 7.1061 1.7225 4.1500 20 6 3.2689 0.2042 1.1902 21 1 2.7329 -0.3517 -2.1158 22 1 6.4189 0.0016 0.0049 23 1 7.1895 0.8501 1.5426 24 1 6.2800 2.1907 1.9187 25 1 7.5011 -2.1746 5.4768 26 1 2.7318 0.3625 2.1138 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104499337.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:19 Heat of formation + Delta-G solvation = 13.666043 kcal Electronic energy + Delta-G solvation = -13851.071126 eV Core-core repulsion = 11230.454222 eV Total energy + Delta-G solvation = -2620.616905 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.79193 -39.35029 -36.59062 -34.88238 -32.03212 -30.74431 -30.04946 -26.50787 -24.16325 -22.85904 -20.95793 -18.21733 -17.07682 -16.43219 -16.15875 -15.88582 -15.49743 -14.72960 -14.23715 -13.85135 -13.73487 -13.55236 -13.14463 -12.71902 -12.29964 -12.06636 -11.88603 -11.47437 -11.42191 -10.85122 -10.37256 -10.11423 -9.42909 -8.73755 -8.65632 -8.46738 -7.39427 -6.11117 -4.24021 0.78896 1.32383 2.64460 2.97275 3.44142 3.55834 3.76722 3.84136 3.90186 4.45345 4.60795 4.87613 5.07304 5.18752 5.19770 5.47695 5.73724 5.75907 6.09542 6.15261 6.30571 6.41637 6.87688 6.93188 7.41337 7.46070 7.99442 8.17889 8.52794 8.87498 9.51190 10.97997 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.008588 C = 0.007516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.654015 B = 3259.525969 C = 3724.285109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.265 3.735 3 C -0.008 4.008 4 C -0.129 4.129 5 C 0.097 3.903 6 F -0.140 7.140 7 C -0.120 4.120 8 C -0.040 4.040 9 C 0.218 3.782 10 H 0.054 0.946 11 N -0.834 5.834 12 C -0.528 4.528 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.894 5.894 16 Si 0.866 3.134 17 H -0.296 1.296 18 H -0.303 1.303 19 H -0.192 1.192 20 C -0.077 4.077 21 H 0.137 0.863 22 H 0.141 0.859 23 H 0.332 0.668 24 H 0.311 0.689 25 H 0.265 0.735 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 6.696 -9.292 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.050 4.050 3 C -0.011 4.011 4 C -0.150 4.150 5 C 0.078 3.922 6 F -0.118 7.118 7 C -0.140 4.140 8 C -0.042 4.042 9 C 0.109 3.891 10 H 0.072 0.928 11 N -0.363 5.363 12 C -0.566 4.566 13 H 0.090 0.910 14 C -0.117 4.117 15 N -0.530 5.530 16 Si 0.692 3.308 17 H -0.223 1.223 18 H -0.230 1.230 19 H -0.113 1.113 20 C -0.098 4.098 21 H 0.155 0.845 22 H 0.159 0.841 23 H 0.146 0.854 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.644 6.504 -8.433 11.618 hybrid contribution 0.445 0.322 -0.600 0.813 sum -4.199 6.826 -9.032 12.075 Atomic orbital electron populations 1.81214 1.12010 1.09115 1.07664 1.25616 0.92527 0.93422 0.93427 1.15674 0.84162 1.06667 0.94613 1.20842 0.92435 1.03649 0.98107 1.17382 0.89399 1.03276 0.82152 1.91498 1.79919 1.92816 1.47580 1.21256 1.01662 1.00406 0.90695 1.21175 0.93253 0.92413 0.97376 1.18705 0.87906 0.94814 0.87697 0.92819 1.60059 1.19292 1.04911 1.52064 1.20665 1.37257 0.90180 1.08463 0.90976 1.24975 0.93430 0.96717 0.96591 1.69943 1.36435 1.25300 1.21342 0.87208 0.76585 0.87698 0.79262 1.22338 1.23040 1.11289 1.21235 0.94132 0.98007 0.96434 0.84512 0.84149 0.85409 0.87759 0.92563 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.70 18.54 41.83 0.78 -5.93 15 2 C 0.27 3.77 15.33 -22.47 -0.34 3.42 15 3 C -0.01 -0.10 5.73 -106.94 -0.61 -0.72 15 4 C -0.13 -1.65 9.73 -39.09 -0.38 -2.03 15 5 C 0.10 1.36 7.29 -39.48 -0.29 1.07 15 6 F -0.14 -1.95 17.26 2.25 0.04 -1.91 15 7 C -0.12 -1.83 9.26 -39.42 -0.37 -2.19 15 8 C -0.04 -0.65 4.88 -104.70 -0.51 -1.16 15 9 C 0.22 4.27 2.35 -70.02 -0.16 4.11 15 10 H 0.05 1.06 7.42 -51.93 -0.39 0.68 15 11 N -0.83 -14.67 5.66 -6.65 -0.04 -14.71 15 12 C -0.53 -13.31 9.28 -34.44 -0.32 -13.63 15 13 H 0.07 2.03 7.98 -52.48 -0.42 1.61 15 14 C 0.09 2.37 5.47 -17.82 -0.10 2.28 15 15 N -0.89 -26.24 13.96 55.43 0.77 -25.46 15 16 Si 0.87 20.07 26.94 -169.99 -4.58 15.49 15 17 H -0.30 -7.02 7.11 56.52 0.40 -6.62 15 18 H -0.30 -7.37 7.11 56.52 0.40 -6.97 15 19 H -0.19 -4.01 5.17 56.52 0.29 -3.71 15 20 C -0.08 -1.14 9.37 -39.17 -0.37 -1.51 15 21 H 0.14 1.45 8.06 -52.48 -0.42 1.02 15 22 H 0.14 2.07 6.65 -52.48 -0.35 1.72 15 23 H 0.33 5.57 7.33 -39.29 -0.29 5.29 15 24 H 0.31 4.57 9.06 -39.29 -0.36 4.22 15 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 26 H 0.14 1.92 8.03 -52.49 -0.42 1.50 15 LS Contribution 243.27 15.07 3.67 3.67 Total: -1.00 -28.74 243.27 -4.70 -33.44 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -1.89 Total: 5.78 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.45 Total: -10.36 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 1.51 Total: -46.10 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.58 Total: 15.49 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.74 -4.70 -33.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104499337.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.107 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds