Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39625 * 120.14040 * 53.56698 * 3 2 1 5 5 C 1.38156 * 119.82215 * 179.97438 * 4 3 2 6 6 F 1.35097 * 119.95292 * 180.02562 * 5 4 3 7 7 C 1.38599 * 120.09770 * 359.74591 * 5 4 3 8 8 C 1.38305 * 120.28294 * 0.51099 * 7 5 4 9 9 C 1.50701 * 119.91656 * 179.76521 * 8 7 5 10 10 H 1.08997 * 109.47052 * 199.72578 * 9 8 7 11 11 N 1.46899 * 109.46869 * 319.72614 * 9 8 7 12 12 C 1.50699 * 109.46833 * 79.72314 * 9 8 7 13 13 H 1.08002 * 120.00516 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 9 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 9 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 C 1.37980 * 120.17350 * 359.48950 * 8 7 5 21 21 H 1.08001 * 120.08716 * 359.95326 * 4 3 2 22 22 H 1.08004 * 119.86472 * 180.27460 * 7 5 4 23 23 H 1.00898 * 111.00359 * 59.99381 * 11 9 8 24 24 H 1.00893 * 111.00015 * 183.95514 * 11 9 8 25 25 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 26 26 H 1.08002 * 120.04885 * 180.23519 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.7161 -0.9715 5 6 4.6509 -0.7105 -0.9656 6 9 5.3322 -1.4027 -1.9047 7 6 5.3390 0.0089 -0.0013 8 6 4.6485 0.7161 0.9662 9 6 5.4050 1.4912 2.0140 10 1 4.7525 1.6830 2.8657 11 7 6.5691 0.7111 2.4548 12 6 5.8695 2.8013 1.4318 13 1 5.6402 3.0479 0.4056 14 6 6.5881 3.6849 2.2091 15 7 6.8685 3.3840 3.4583 16 14 7.1573 5.3122 1.4898 17 1 8.5037 5.1429 0.8867 18 1 6.1989 5.7538 0.4450 19 1 7.2217 6.3335 2.5659 20 6 3.2687 0.7184 0.9711 21 1 2.7333 -1.2737 -1.7253 22 1 6.4190 0.0143 -0.0029 23 1 7.1898 0.5200 1.6826 24 1 7.0566 1.1806 3.2031 25 1 7.3744 4.0055 4.0049 26 1 2.7315 1.2745 1.7252 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104499343.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = -15.364189 kcal Electronic energy + Delta-G solvation = -13810.358175 eV Core-core repulsion = 11188.482425 eV Total energy + Delta-G solvation = -2621.875750 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.83508 -40.43030 -37.75354 -36.37432 -33.62260 -31.82626 -31.13703 -27.95441 -25.48409 -24.29682 -22.41918 -19.48751 -18.54794 -17.49500 -17.39577 -17.06254 -16.60388 -16.54108 -15.64242 -15.01274 -14.79039 -14.66997 -14.37034 -14.13750 -13.57830 -13.21793 -13.18593 -12.85102 -12.66441 -12.63782 -12.39980 -11.88575 -11.55833 -10.70097 -9.85981 -9.67937 -9.15523 -8.10787 -6.35510 -0.28256 0.25958 1.40873 1.45222 1.52769 1.53606 1.87145 2.39563 2.66983 2.81920 3.08896 3.38647 3.85610 3.99482 4.11728 4.38917 4.53852 4.76807 5.01938 5.07554 5.21055 5.24660 5.67766 5.73386 5.89044 6.06657 6.36281 6.65741 6.93434 7.14230 7.41073 8.83819 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.028096 B = 0.008208 C = 0.007371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.355618 B = 3410.548154 C = 3797.670648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.287 3.713 3 C -0.003 4.003 4 C -0.109 4.109 5 C 0.096 3.904 6 F -0.137 7.137 7 C -0.112 4.112 8 C -0.021 4.021 9 C 0.241 3.759 10 H 0.027 0.973 11 N -0.843 5.843 12 C -0.559 4.559 13 H 0.054 0.946 14 C 0.027 3.973 15 N -0.913 5.913 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.273 1.273 19 H -0.286 1.286 20 C -0.081 4.081 21 H 0.168 0.832 22 H 0.138 0.862 23 H 0.320 0.680 24 H 0.348 0.652 25 H 0.268 0.732 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -5.773 -6.886 9.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.028 4.028 3 C -0.006 4.006 4 C -0.130 4.130 5 C 0.077 3.923 6 F -0.116 7.116 7 C -0.132 4.132 8 C -0.022 4.022 9 C 0.130 3.870 10 H 0.045 0.955 11 N -0.373 5.373 12 C -0.599 4.599 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.552 5.552 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.212 1.212 20 C -0.102 4.102 21 H 0.185 0.815 22 H 0.156 0.844 23 H 0.131 0.869 24 H 0.163 0.837 25 H 0.077 0.923 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.265 -6.296 -6.537 10.028 hybrid contribution 1.579 1.835 -0.444 2.461 sum -2.686 -4.462 -6.981 8.710 Atomic orbital electron populations 1.81235 1.12672 1.09675 1.09122 1.25476 0.92237 0.92497 0.92542 1.15466 0.83730 1.02712 0.98714 1.21060 0.91861 1.00506 0.99562 1.17302 0.89768 0.96063 0.89202 1.91500 1.79992 1.77175 1.62908 1.21214 1.01701 0.96575 0.93713 1.19965 0.93110 0.93669 0.95422 1.17886 0.90029 0.88273 0.90778 0.95530 1.59509 1.12817 1.50956 1.13996 1.22037 1.35416 1.03892 0.98532 0.92794 1.25649 0.95771 1.01023 0.94943 1.69822 1.39873 1.37963 1.07574 0.85618 0.78637 0.79715 0.78008 1.20138 1.19749 1.21173 1.21154 0.93525 0.97597 0.97893 0.81477 0.84420 0.86937 0.83686 0.92310 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.97 18.54 19.00 0.35 -13.62 15 2 C 0.29 7.96 15.33 88.33 1.35 9.31 15 3 C 0.00 -0.07 5.73 -21.37 -0.12 -0.19 15 4 C -0.11 -2.62 9.73 22.59 0.22 -2.40 15 5 C 0.10 2.64 7.29 22.34 0.16 2.80 15 6 F -0.14 -3.67 17.26 44.97 0.78 -2.89 15 7 C -0.11 -3.62 9.26 22.37 0.21 -3.41 15 8 C -0.02 -0.75 4.89 -19.91 -0.10 -0.85 15 9 C 0.24 10.70 2.94 43.42 0.13 10.83 15 10 H 0.03 1.32 8.00 -2.39 -0.02 1.30 15 11 N -0.84 -36.21 9.02 -174.96 -1.58 -37.78 15 12 C -0.56 -27.30 8.70 25.60 0.22 -27.08 15 13 H 0.05 2.64 7.74 -2.91 -0.02 2.62 15 14 C 0.03 1.35 5.38 84.66 0.46 1.80 15 15 N -0.91 -47.24 11.54 21.45 0.25 -46.99 15 16 Si 0.95 40.27 29.54 68.60 2.03 42.30 15 17 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 19 H -0.29 -12.06 7.11 99.48 0.71 -11.35 15 20 C -0.08 -2.55 9.37 22.54 0.21 -2.34 15 21 H 0.17 3.00 8.06 -2.91 -0.02 2.97 15 22 H 0.14 4.41 6.66 -2.91 -0.02 4.40 15 23 H 0.32 12.77 7.33 -89.70 -0.66 12.11 15 24 H 0.35 16.41 7.08 -89.70 -0.63 15.77 15 25 H 0.27 13.30 8.31 -92.70 -0.77 12.53 15 26 H 0.14 4.22 8.03 -2.91 -0.02 4.20 15 Total: -1.00 -51.90 247.04 4.52 -47.38 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.05 Total: 23.13 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 2.74 Total: -11.53 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -0.98 Total: -98.40 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.78 Total: -2.89 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -51.90 4.52 -47.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104499343.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.019 kcal (2) G-P(sol) polarization free energy of solvation -51.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds