Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34777 * 117.00000 * 2 1 4 4 O 1.21509 * 119.99738 * 0.02562 * 3 2 1 5 5 C 1.47505 * 120.00251 * 179.97438 * 3 2 1 6 6 C 1.40091 * 119.89515 * 353.38241 * 5 3 2 7 7 C 1.36283 * 120.09926 * 180.27878 * 6 5 3 8 8 C 1.40920 * 119.89578 * 359.97438 * 7 6 5 9 9 C 1.41089 * 120.09742 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00354 * 205.31826 * 9 8 7 11 11 C 1.40246 * 119.99784 * 25.31935 * 9 8 7 12 12 N 1.30627 * 120.00133 * 16.83797 * 11 9 8 13 13 Si 1.86803 * 119.99774 * 196.83001 * 11 9 8 14 14 H 1.48497 * 109.47254 * 60.00468 * 13 11 9 15 15 H 1.48499 * 109.47014 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47448 * 300.00027 * 13 11 9 17 17 C 1.40882 * 119.80407 * 0.02562 * 8 7 6 18 18 C 1.36317 * 119.89550 * 359.97438 * 17 8 7 19 19 C 1.50701 * 119.94511 * 179.97438 * 18 17 8 20 20 H 1.08998 * 109.46885 * 299.99787 * 1 2 3 21 21 H 1.09000 * 109.47055 * 59.99871 * 1 2 3 22 22 H 1.08994 * 109.46929 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.95117 * 0.24872 * 6 5 3 24 24 H 1.07997 * 120.05517 * 179.97438 * 7 6 5 25 25 H 0.97003 * 120.00258 * 180.02562 * 12 11 9 26 26 H 1.08001 * 120.04902 * 180.02562 * 17 8 7 27 27 H 1.08996 * 109.47045 * 262.93618 * 19 18 17 28 28 H 1.08997 * 109.47435 * 22.94385 * 19 18 17 29 29 H 1.09008 * 109.47108 * 142.93647 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4021 2.2199 0.0005 5 6 3.5370 1.2781 0.0006 6 6 4.2974 0.1100 0.1411 7 6 5.6585 0.1772 0.1479 8 6 6.3009 1.4242 0.0127 9 6 7.7098 1.4987 0.0186 10 1 8.2011 2.4112 0.3225 11 6 8.4723 0.3877 -0.3701 12 7 7.9145 -0.5853 -1.0399 13 14 10.2857 0.2994 0.0697 14 1 10.4396 0.3411 1.5460 15 1 10.8607 -0.9662 -0.4528 16 1 10.9985 1.4531 -0.5352 17 6 5.5320 2.5963 -0.1283 18 6 4.1710 2.5195 -0.1340 19 6 3.3475 3.7726 -0.2842 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.8042 -0.8452 0.2447 24 1 6.2440 -0.7237 0.2566 25 1 8.4418 -1.3539 -1.3085 26 1 6.0202 3.5540 -0.2326 27 1 3.0324 4.1204 0.6995 28 1 3.9456 4.5446 -0.7683 29 1 2.4687 3.5591 -0.8928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113293457.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -80.320572 kcal Electronic energy + Delta-G solvation = -14373.299632 eV Core-core repulsion = 11839.774716 eV Total energy + Delta-G solvation = -2533.524916 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.58527 -37.59778 -35.61923 -34.06722 -31.23006 -30.41997 -27.54020 -25.88819 -25.61824 -21.94320 -20.57064 -19.80345 -17.16533 -16.77976 -16.05718 -15.60323 -15.41083 -13.88514 -13.78622 -13.57173 -13.09574 -12.65746 -12.17327 -12.13702 -11.83428 -11.60162 -11.45679 -11.33352 -11.09659 -10.90994 -10.47411 -10.17564 -10.13065 -9.57992 -9.36102 -9.07600 -7.70014 -7.46057 -7.06711 -4.66640 2.08142 2.88827 2.92694 2.95896 3.01178 3.58859 3.64925 3.72121 4.46687 5.46774 5.47207 5.53964 5.68817 5.98742 6.07117 6.13891 6.40803 6.55414 6.75436 6.81183 6.83032 7.00113 7.11999 7.17830 7.43865 7.73180 7.80952 7.87105 8.03530 8.37036 8.58302 8.71474 8.78416 9.84251 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.049571 B = 0.007279 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.714448 B = 3845.654710 C = 4328.769116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.510 3.490 4 O -0.547 6.547 5 C -0.273 4.273 6 C -0.043 4.043 7 C -0.185 4.185 8 C 0.135 3.865 9 C -0.437 4.437 10 H 0.086 0.914 11 C 0.073 3.927 12 N -0.766 5.766 13 Si 0.916 3.084 14 H -0.260 1.260 15 H -0.275 1.275 16 H -0.262 1.262 17 C -0.240 4.240 18 C 0.012 3.988 19 C -0.111 4.111 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.090 0.910 23 H 0.102 0.898 24 H 0.122 0.878 25 H 0.289 0.711 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.351 -0.843 1.162 3.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.283 6.283 3 C 0.363 3.637 4 O -0.441 6.441 5 C -0.275 4.275 6 C -0.062 4.062 7 C -0.204 4.204 8 C 0.131 3.869 9 C -0.464 4.464 10 H 0.104 0.896 11 C -0.149 4.149 12 N -0.389 5.389 13 Si 0.739 3.261 14 H -0.184 1.184 15 H -0.200 1.200 16 H -0.186 1.186 17 C -0.260 4.260 18 C 0.011 3.989 19 C -0.168 4.168 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.120 0.880 24 H 0.140 0.860 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.515 -0.806 1.027 3.750 hybrid contribution 0.591 -0.159 0.072 0.617 sum -2.924 -0.966 1.100 3.269 Atomic orbital electron populations 1.23025 0.78405 1.02380 1.01693 1.86613 1.21629 1.34522 1.85528 1.21610 0.89759 0.80161 0.72182 1.90657 1.67509 1.35531 1.50399 1.18088 0.86467 0.94777 1.28196 1.20633 0.94300 0.95563 0.95716 1.21019 0.92746 0.98694 1.07980 1.17818 0.93212 0.91279 0.84556 1.19876 0.91446 0.98761 1.36339 0.89572 1.26139 1.02072 0.94391 0.92271 1.69729 1.39227 1.06916 1.23035 0.86222 0.80631 0.78808 0.80405 1.18399 1.19969 1.18603 1.20555 0.92002 0.98031 1.15386 1.19161 0.93662 0.92563 0.93488 1.20962 0.99513 0.94556 1.01750 0.92741 0.92724 0.89158 0.88021 0.86034 0.89986 0.88100 0.92212 0.93661 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.57 101.05 1.07 1.64 15 2 O -0.37 -7.19 9.81 -40.70 -0.40 -7.59 15 3 C 0.51 11.39 7.81 34.51 0.27 11.66 15 4 O -0.55 -12.49 13.11 -19.27 -0.25 -12.75 15 5 C -0.27 -6.52 5.89 -104.75 -0.62 -7.13 15 6 C -0.04 -1.03 9.54 -39.59 -0.38 -1.40 15 7 C -0.19 -4.66 8.63 -39.27 -0.34 -5.00 15 8 C 0.13 3.45 5.57 -106.80 -0.59 2.85 15 9 C -0.44 -10.81 9.05 -37.75 -0.34 -11.15 15 10 H 0.09 2.01 7.90 -52.48 -0.41 1.60 15 11 C 0.07 1.70 5.15 -17.31 -0.09 1.61 15 12 N -0.77 -18.34 10.93 55.56 0.61 -17.73 15 13 Si 0.92 17.09 29.59 -169.99 -5.03 12.06 15 14 H -0.26 -4.83 7.11 56.52 0.40 -4.42 15 15 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 16 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 17 C -0.24 -5.83 9.34 -39.27 -0.37 -6.20 15 18 C 0.01 0.28 5.88 -104.64 -0.61 -0.33 15 19 C -0.11 -2.30 8.67 36.01 0.31 -1.99 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.10 2.21 7.60 -52.49 -0.40 1.81 15 24 H 0.12 3.07 6.17 -52.49 -0.32 2.75 15 25 H 0.29 6.21 8.29 -40.82 -0.34 5.87 15 26 H 0.10 2.28 8.04 -52.49 -0.42 1.85 15 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.04 0.83 8.02 -51.93 -0.42 0.42 15 29 H 0.08 1.69 5.89 -51.92 -0.31 1.38 15 LS Contribution 255.34 15.07 3.85 3.85 Total: -1.00 -27.29 255.34 -6.02 -33.31 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.11 Total: 4.28 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.69 Total: -15.44 kcal Atomic # 7 Polarization: -18.34 SS G_CDS: 0.61 Total: -17.73 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.65 Total: -20.33 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.29 -6.02 -33.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113293457.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.009 kcal (2) G-P(sol) polarization free energy of solvation -27.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds