Wall clock time and date at job start Mon Mar 30 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34777 * 117.00000 * 2 1 4 4 O 1.21509 * 119.99738 * 0.02562 * 3 2 1 5 5 C 1.47505 * 120.00251 * 179.97438 * 3 2 1 6 6 C 1.40091 * 119.89515 * 353.38241 * 5 3 2 7 7 C 1.36283 * 120.09926 * 180.27878 * 6 5 3 8 8 C 1.40920 * 119.89578 * 359.97438 * 7 6 5 9 9 C 1.41089 * 120.09742 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00354 * 205.31826 * 9 8 7 11 11 C 1.40246 * 119.99784 * 25.31935 * 9 8 7 12 12 N 1.30627 * 120.00133 * 16.83797 * 11 9 8 13 13 Si 1.86803 * 119.99774 * 196.83001 * 11 9 8 14 14 H 1.48497 * 109.47254 * 60.00468 * 13 11 9 15 15 H 1.48499 * 109.47014 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47448 * 300.00027 * 13 11 9 17 17 C 1.40882 * 119.80407 * 0.02562 * 8 7 6 18 18 C 1.36317 * 119.89550 * 359.97438 * 17 8 7 19 19 C 1.50701 * 119.94511 * 179.97438 * 18 17 8 20 20 H 1.08998 * 109.46885 * 299.99787 * 1 2 3 21 21 H 1.09000 * 109.47055 * 59.99871 * 1 2 3 22 22 H 1.08994 * 109.46929 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.95117 * 0.24872 * 6 5 3 24 24 H 1.07997 * 120.05517 * 179.97438 * 7 6 5 25 25 H 0.97003 * 120.00258 * 180.02562 * 12 11 9 26 26 H 1.08001 * 120.04902 * 180.02562 * 17 8 7 27 27 H 1.08996 * 109.47045 * 262.93618 * 19 18 17 28 28 H 1.08997 * 109.47435 * 22.94385 * 19 18 17 29 29 H 1.09008 * 109.47108 * 142.93647 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4021 2.2199 0.0005 5 6 3.5370 1.2781 0.0006 6 6 4.2974 0.1100 0.1411 7 6 5.6585 0.1772 0.1479 8 6 6.3009 1.4242 0.0127 9 6 7.7098 1.4987 0.0186 10 1 8.2011 2.4112 0.3225 11 6 8.4723 0.3877 -0.3701 12 7 7.9145 -0.5853 -1.0399 13 14 10.2857 0.2994 0.0697 14 1 10.4396 0.3411 1.5460 15 1 10.8607 -0.9662 -0.4528 16 1 10.9985 1.4531 -0.5352 17 6 5.5320 2.5963 -0.1283 18 6 4.1710 2.5195 -0.1340 19 6 3.3475 3.7726 -0.2842 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.8042 -0.8452 0.2447 24 1 6.2440 -0.7237 0.2566 25 1 8.4418 -1.3539 -1.3085 26 1 6.0202 3.5540 -0.2326 27 1 3.0324 4.1204 0.6995 28 1 3.9456 4.5446 -0.7683 29 1 2.4687 3.5591 -0.8928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113293457.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:20 Heat of formation + Delta-G solvation = -94.135614 kcal Electronic energy + Delta-G solvation = -14373.898697 eV Core-core repulsion = 11839.774716 eV Total energy + Delta-G solvation = -2534.123981 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.26343 -39.37388 -37.26423 -35.85401 -33.02088 -32.24030 -29.00098 -27.66066 -27.24103 -23.70037 -22.35200 -21.56861 -18.98749 -18.47577 -17.71692 -17.15982 -17.08318 -15.61011 -15.50538 -15.17720 -14.68100 -14.30005 -13.85152 -13.75255 -13.55238 -13.19938 -13.08227 -12.85479 -12.68434 -12.50153 -12.24782 -11.83624 -11.62460 -11.38580 -11.11944 -10.80563 -9.57205 -9.32385 -8.81935 -6.54282 0.28132 1.12672 1.38125 1.42693 1.53178 1.91118 2.09304 2.16001 2.68595 3.60526 4.22670 4.30662 4.35923 4.38441 4.40937 4.70286 4.72065 4.90786 4.94204 4.99676 5.14781 5.16519 5.32254 5.50354 5.60903 5.89189 5.94850 6.02534 6.18955 6.51299 6.72488 6.85061 7.08541 8.12466 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.049571 B = 0.007279 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.714448 B = 3845.654710 C = 4328.769116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.513 3.487 4 O -0.555 6.555 5 C -0.293 4.293 6 C -0.042 4.042 7 C -0.205 4.205 8 C 0.108 3.892 9 C -0.465 4.465 10 H 0.092 0.908 11 C 0.036 3.964 12 N -0.795 5.795 13 Si 0.991 3.009 14 H -0.257 1.257 15 H -0.264 1.264 16 H -0.256 1.256 17 C -0.256 4.256 18 C 0.002 3.998 19 C -0.103 4.103 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.130 0.870 23 H 0.117 0.883 24 H 0.113 0.887 25 H 0.299 0.701 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -1.037 1.280 3.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.290 6.290 3 C 0.366 3.634 4 O -0.451 6.451 5 C -0.295 4.295 6 C -0.061 4.061 7 C -0.224 4.224 8 C 0.105 3.895 9 C -0.491 4.491 10 H 0.110 0.890 11 C -0.184 4.184 12 N -0.418 5.418 13 Si 0.810 3.190 14 H -0.181 1.181 15 H -0.188 1.188 16 H -0.180 1.180 17 C -0.275 4.275 18 C 0.002 3.998 19 C -0.159 4.159 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.148 0.852 23 H 0.135 0.865 24 H 0.131 0.869 25 H 0.110 0.890 26 H 0.129 0.871 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.405 -1.008 1.141 3.730 hybrid contribution 0.421 -0.147 0.013 0.446 sum -2.984 -1.155 1.153 3.402 Atomic orbital electron populations 1.23449 0.75347 1.05230 1.02167 1.86569 1.24584 1.32920 1.84913 1.21321 0.89273 0.80845 0.71986 1.90641 1.67642 1.36005 1.50768 1.18404 0.87907 0.94951 1.28265 1.20791 0.93940 0.96420 0.94963 1.21020 0.93343 0.98457 1.09615 1.18174 0.94178 0.91914 0.85256 1.20199 0.91619 1.00021 1.37260 0.89034 1.27021 1.06578 0.93386 0.91383 1.69760 1.41300 1.07515 1.23180 0.85102 0.74583 0.79251 0.80023 1.18140 1.18835 1.17979 1.20735 0.92505 0.98197 1.16042 1.19530 0.93846 0.93777 0.92682 1.20906 0.99041 0.93777 1.02169 0.92231 0.92322 0.85211 0.86528 0.86896 0.88979 0.87083 0.91545 0.91660 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.57 113.37 1.20 2.03 15 2 O -0.37 -14.08 9.81 -56.88 -0.56 -14.63 15 3 C 0.51 22.47 7.81 70.27 0.55 23.02 15 4 O -0.56 -24.75 13.11 19.81 0.26 -24.49 15 5 C -0.29 -13.98 5.89 -19.95 -0.12 -14.10 15 6 C -0.04 -2.03 9.54 22.26 0.21 -1.82 15 7 C -0.21 -10.54 8.63 22.47 0.19 -10.34 15 8 C 0.11 5.64 5.57 -21.28 -0.12 5.52 15 9 C -0.46 -23.19 9.05 23.46 0.21 -22.98 15 10 H 0.09 4.30 7.90 -2.91 -0.02 4.28 15 11 C 0.04 1.66 5.15 85.36 0.44 2.10 15 12 N -0.79 -38.14 10.93 21.87 0.24 -37.90 15 13 Si 0.99 34.24 29.59 68.60 2.03 36.27 15 14 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 15 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 16 H -0.26 -8.55 7.11 99.48 0.71 -7.85 15 17 C -0.26 -12.52 9.34 22.47 0.21 -12.31 15 18 C 0.00 0.11 5.88 -19.88 -0.12 -0.01 15 19 C -0.10 -4.13 8.67 71.24 0.62 -3.52 15 20 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.13 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.12 5.07 7.60 -2.91 -0.02 5.05 15 24 H 0.11 5.88 6.17 -2.91 -0.02 5.86 15 25 H 0.30 12.75 8.29 -92.71 -0.77 11.98 15 26 H 0.11 5.03 8.04 -2.91 -0.02 5.01 15 27 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 28 H 0.06 2.31 8.02 -2.39 -0.02 2.30 15 29 H 0.07 3.03 5.89 -2.38 -0.01 3.02 15 Total: -1.00 -57.88 255.34 6.41 -51.47 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.15 Total: 21.69 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.28 Total: -32.40 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.24 Total: -37.90 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.30 Total: -39.13 kcal Atomic # 14 Polarization: 34.24 SS G_CDS: 2.03 Total: 36.27 kcal Total: -57.88 6.41 -51.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113293457.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.665 kcal (2) G-P(sol) polarization free energy of solvation -57.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds