Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34702 * 117.00234 * 2 1 4 4 O 1.21463 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.47774 * 119.99902 * 179.97438 * 3 2 1 6 6 C 1.39968 * 120.02860 * 179.97438 * 5 3 2 7 7 C 1.38313 * 120.35060 * 180.02562 * 6 5 3 8 8 C 1.50704 * 119.79123 * 180.02562 * 7 6 5 9 9 C 1.37763 * 120.42298 * 0.02586 * 7 6 5 10 10 C 1.40757 * 120.04363 * 359.95139 * 9 7 6 11 11 C 1.41441 * 120.17191 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99884 * 24.41773 * 11 10 9 13 13 C 1.39934 * 120.00330 * 204.41319 * 11 10 9 14 14 N 1.30828 * 119.99681 * 17.85009 * 13 11 10 15 15 Si 1.86794 * 120.00346 * 197.84585 * 13 11 10 16 16 H 1.48501 * 109.47135 * 89.99953 * 15 13 11 17 17 H 1.48501 * 109.47561 * 209.99890 * 15 13 11 18 18 H 1.48500 * 109.47212 * 330.00422 * 15 13 11 19 19 C 1.39046 * 120.02815 * 0.02562 * 5 3 2 20 20 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47091 * 300.00388 * 1 2 3 22 22 H 1.09000 * 109.47142 * 59.99928 * 1 2 3 23 23 H 1.07998 * 119.82044 * 0.02562 * 6 5 3 24 24 H 1.08998 * 109.47074 * 89.99606 * 8 7 6 25 25 H 1.08997 * 109.47548 * 210.00238 * 8 7 6 26 26 H 1.09005 * 109.46908 * 330.00278 * 8 7 6 27 27 H 1.07991 * 119.97948 * 179.97438 * 9 7 6 28 28 H 0.96996 * 119.99900 * 180.02562 * 14 13 11 29 29 H 1.07996 * 120.21131 * 359.70287 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2189 0.0005 5 6 3.5393 1.2774 0.0006 6 6 4.1754 2.5242 0.0000 7 6 5.5562 2.6043 0.0000 8 6 6.2280 3.9533 0.0000 9 6 6.3214 1.4587 0.0000 10 6 5.6996 0.1959 0.0011 11 6 6.4826 -0.9820 0.0016 12 1 7.4910 -0.9600 0.3879 13 6 5.9509 -2.1759 -0.4983 14 7 4.8957 -2.1490 -1.2713 15 14 6.7476 -3.8082 -0.0622 16 1 6.1320 -4.3436 1.1786 17 1 6.5415 -4.7722 -1.1728 18 1 8.2028 -3.6065 0.1546 19 6 4.2971 0.1116 0.0006 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.5849 3.4284 -0.0004 24 1 6.3899 4.2785 1.0277 25 1 7.1866 3.8819 -0.5138 26 1 5.5932 4.6753 -0.5138 27 1 7.3990 1.5296 -0.0004 28 1 4.5269 -2.9766 -1.6175 29 1 3.8108 -0.8526 0.0050 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114879790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = -82.216545 kcal Electronic energy + Delta-G solvation = -14397.510124 eV Core-core repulsion = 11863.902992 eV Total energy + Delta-G solvation = -2533.607132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67450 -37.60358 -35.69964 -33.97660 -31.54487 -30.24460 -27.37650 -25.88375 -25.25591 -22.89022 -20.44106 -19.67137 -17.10310 -16.69133 -15.90805 -15.68009 -15.04754 -14.65327 -13.76695 -13.42254 -13.00361 -12.81900 -12.67323 -12.19951 -11.66486 -11.61414 -11.54611 -11.10325 -10.96748 -10.62293 -10.46897 -10.32555 -10.25538 -9.74997 -9.45102 -9.23951 -7.70923 -7.42042 -6.85207 -4.45547 1.96334 2.73511 3.04363 3.07555 3.09057 3.43865 3.58289 3.87964 4.53870 5.45483 5.46435 5.52151 5.58160 5.85051 5.91230 5.99932 6.26891 6.41176 6.50320 6.64957 6.87908 6.93142 7.06030 7.15709 7.32989 7.65676 7.79326 7.89977 8.07653 8.41559 8.55435 8.75280 8.78460 10.10234 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.011321 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.181415 B = 2472.765102 C = 3716.287571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.515 3.485 4 O -0.534 6.534 5 C -0.116 4.116 6 C -0.180 4.180 7 C -0.076 4.076 8 C -0.102 4.102 9 C -0.196 4.196 10 C 0.095 3.905 11 C -0.460 4.460 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.789 5.789 15 Si 0.911 3.089 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.099 4.099 20 H 0.095 0.905 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.284 0.716 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 0.589 1.598 2.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.363 3.637 4 O -0.425 6.425 5 C -0.117 4.117 6 C -0.199 4.199 7 C -0.076 4.076 8 C -0.159 4.159 9 C -0.216 4.216 10 C 0.092 3.908 11 C -0.489 4.489 12 H 0.100 0.900 13 C -0.144 4.144 14 N -0.414 5.414 15 Si 0.735 3.265 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.119 4.119 20 H 0.113 0.887 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.669 0.703 1.443 3.114 hybrid contribution 0.002 -0.765 0.047 0.766 sum -2.666 -0.062 1.489 3.055 Atomic orbital electron populations 1.23128 0.77881 1.02915 1.01827 1.86682 1.21992 1.33446 1.84426 1.21872 0.90102 0.80521 0.71214 1.90702 1.67393 1.36279 1.48142 1.18820 0.86676 0.95752 1.10498 1.20232 0.93313 0.94842 1.11542 1.19274 0.92919 0.94421 1.01027 1.20658 0.99682 0.94689 1.00894 1.21068 0.97833 0.91902 1.10749 1.17580 0.91667 0.92346 0.89177 1.19567 1.00745 0.92501 1.36111 0.90040 1.25939 0.94529 1.01422 0.92524 1.69787 1.19463 1.30245 1.21884 0.86263 0.80551 0.80560 0.79104 1.19168 1.20258 1.18581 1.21817 0.94061 0.96526 0.99460 0.88678 0.92520 0.92457 0.87871 0.92500 0.92534 0.92762 0.88300 0.90519 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 15 2 O -0.35 -7.28 9.80 -40.50 -0.40 -7.68 15 3 C 0.51 11.88 7.90 34.63 0.27 12.15 15 4 O -0.53 -12.62 16.12 -19.24 -0.31 -12.93 15 5 C -0.12 -2.85 5.87 -105.05 -0.62 -3.46 15 6 C -0.18 -4.18 9.24 -38.91 -0.36 -4.54 15 7 C -0.08 -1.68 5.87 -104.77 -0.61 -2.29 15 8 C -0.10 -1.76 10.00 36.01 0.36 -1.40 15 9 C -0.20 -4.62 9.42 -38.80 -0.37 -4.99 15 10 C 0.09 2.45 5.57 -106.87 -0.60 1.85 15 11 C -0.46 -11.72 9.05 -37.73 -0.34 -12.06 15 12 H 0.08 1.98 7.91 -52.48 -0.41 1.57 15 13 C 0.07 1.80 5.14 -17.34 -0.09 1.71 15 14 N -0.79 -19.83 10.95 55.55 0.61 -19.22 15 15 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 15 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 17 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 19 C -0.10 -2.56 8.25 -38.43 -0.32 -2.87 15 20 H 0.09 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.10 2.30 7.63 -52.49 -0.40 1.90 15 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.06 0.89 8.08 -51.93 -0.42 0.47 15 26 H 0.05 0.86 8.08 -51.93 -0.42 0.44 15 27 H 0.10 2.16 8.06 -52.49 -0.42 1.74 15 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 29 H 0.14 3.59 5.70 -52.49 -0.30 3.29 15 LS Contribution 260.98 15.07 3.93 3.93 Total: -1.00 -28.16 260.98 -6.00 -34.15 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.20 Total: 2.99 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -1.60 Total: -14.28 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.71 Total: -20.61 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.16 -6.00 -34.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114879790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.063 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds