Wall clock time and date at job start Mon Mar 30 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99923 * 2 1 4 4 H 1.48498 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47350 * 300.00206 * 3 2 1 6 6 H 1.48495 * 109.47351 * 60.00167 * 3 2 1 7 7 C 1.37879 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99707 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99988 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46992 * 180.02562 * 9 7 2 11 11 C 1.35985 * 116.99650 * 179.97438 * 10 9 7 12 12 C 1.38715 * 120.17544 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.28808 * 179.86856 * 12 11 10 14 14 C 1.39268 * 120.32200 * 0.05540 * 13 12 11 15 15 C 1.38865 * 118.96018 * 0.17156 * 14 13 12 16 16 C 1.37739 * 120.83696 * 359.39233 * 15 14 13 17 17 C 1.51650 * 107.04714 * 179.45669 * 15 14 13 18 18 C 1.54703 * 101.93312 * 344.49329 * 17 15 14 19 19 O 1.36234 * 129.81826 * 180.61360 * 14 13 12 20 20 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46943 * 60.00185 * 9 7 2 22 22 H 1.08999 * 109.47285 * 300.00325 * 9 7 2 23 23 H 1.07998 * 119.85643 * 359.85216 * 12 11 10 24 24 H 1.08007 * 119.83916 * 180.02562 * 13 12 11 25 25 H 1.08007 * 120.03011 * 180.57740 * 16 15 14 26 26 H 1.09005 * 110.93875 * 226.33024 * 17 15 14 27 27 H 1.09006 * 110.97046 * 102.66740 * 17 15 14 28 28 H 1.09000 * 110.74699 * 267.00801 * 18 17 15 29 29 H 1.08998 * 110.75270 * 143.66261 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.6599 -4.8419 0.0000 12 6 0.2853 -5.0278 0.0000 13 6 -0.2444 -6.3011 -0.0022 14 6 0.5955 -7.4120 -0.0032 15 6 1.9702 -7.2156 0.0016 16 6 2.5019 -5.9450 -0.0052 17 6 2.6153 -8.5880 0.0128 18 6 1.4297 -9.4955 0.4179 19 8 0.2870 -8.7389 -0.0166 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8896 23 1 -0.3731 -4.1717 0.0020 24 1 -1.3158 -6.4375 -0.0026 25 1 3.5731 -5.8074 -0.0108 26 1 3.4140 -8.6370 0.7531 27 1 2.9876 -8.8522 -0.9770 28 1 1.4075 -9.6428 1.4977 29 1 1.4801 -10.4520 -0.1024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143686166.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:45 Heat of formation + Delta-G solvation = -70.627617 kcal Electronic energy + Delta-G solvation = -14085.130498 eV Core-core repulsion = 11552.025900 eV Total energy + Delta-G solvation = -2533.104598 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.02268 -40.14955 -37.17288 -35.02590 -33.61967 -31.01385 -29.94183 -29.15289 -25.31231 -24.33473 -23.05482 -22.16742 -19.03495 -18.49971 -18.29977 -17.39856 -16.95040 -16.64644 -16.39529 -15.61196 -15.09377 -14.46586 -14.21278 -13.87493 -13.70197 -13.55623 -13.36958 -12.94581 -12.89786 -12.57683 -12.29622 -12.23761 -11.74243 -11.31596 -11.19040 -10.68950 -9.93221 -8.64251 -8.40097 -6.54340 0.20863 0.41350 1.39389 1.40796 1.55473 2.23213 2.35287 2.66230 2.73752 2.94722 3.54668 3.77342 3.88717 4.10635 4.21589 4.25287 4.51896 4.64856 4.67048 4.85525 4.89943 4.94807 4.96745 5.14688 5.31256 5.35764 5.48078 5.52872 5.82709 6.17170 6.50159 6.78466 7.17769 8.72445 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.078880 B = 0.005474 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.885881 B = 5114.139607 C = 5436.016411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.557 4.557 8 H 0.067 0.933 9 C 0.210 3.790 10 O -0.335 6.335 11 C 0.089 3.911 12 C -0.190 4.190 13 C -0.100 4.100 14 C 0.046 3.954 15 C -0.137 4.137 16 C -0.120 4.120 17 C -0.103 4.103 18 C 0.047 3.953 19 O -0.322 6.322 20 H 0.274 0.726 21 H 0.002 0.998 22 H 0.003 0.997 23 H 0.124 0.876 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -16.320 0.713 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.085 0.915 9 C 0.137 3.863 10 O -0.249 6.249 11 C 0.043 3.957 12 C -0.209 4.209 13 C -0.119 4.119 14 C 0.001 3.999 15 C -0.138 4.138 16 C -0.138 4.138 17 C -0.139 4.139 18 C -0.027 4.027 19 O -0.237 6.237 20 H 0.083 0.917 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.142 0.858 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.370 -16.267 0.658 16.626 hybrid contribution -0.191 1.178 0.016 1.194 sum 3.179 -15.089 0.674 15.435 Atomic orbital electron populations 1.70063 1.07751 1.29006 1.49571 1.25978 0.96038 1.03405 0.93460 0.85048 0.78631 0.76812 0.78399 1.18679 1.19518 1.19485 1.21355 0.94413 0.90140 1.53544 0.91467 1.20205 0.88489 0.82623 0.94988 1.86043 1.38451 1.12525 1.87894 1.19382 0.92554 0.85850 0.97951 1.21103 0.94420 0.97960 1.07432 1.20124 1.00304 0.88558 1.02921 1.19464 0.93280 0.85005 1.02165 1.20888 0.94130 0.95497 1.03296 1.19636 1.00160 0.88496 1.05558 1.21935 0.99206 0.87584 1.05197 1.24153 0.81107 0.95755 1.01677 1.86787 1.40234 1.13375 1.83337 0.91705 0.97997 0.97967 0.85840 0.83853 0.83960 0.86739 0.87436 0.89467 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.47 15 2 C 0.01 0.60 5.46 84.65 0.46 1.07 15 3 Si 0.99 43.69 29.54 68.60 2.03 45.72 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.56 -33.01 9.43 25.60 0.24 -32.77 15 8 H 0.07 3.92 7.81 -2.91 -0.02 3.90 15 9 C 0.21 11.91 4.50 71.24 0.32 12.23 15 10 O -0.33 -17.26 10.13 -93.38 -0.95 -18.20 15 11 C 0.09 3.85 6.69 22.51 0.15 4.00 15 12 C -0.19 -7.80 9.02 22.31 0.20 -7.60 15 13 C -0.10 -3.48 10.06 22.44 0.23 -3.25 15 14 C 0.05 1.44 7.04 22.67 0.16 1.60 15 15 C -0.14 -4.06 6.27 -19.53 -0.12 -4.19 15 16 C -0.12 -4.23 9.98 22.28 0.22 -4.01 15 17 C -0.10 -1.87 7.12 30.73 0.22 -1.65 15 18 C 0.05 0.79 8.01 72.56 0.58 1.37 15 19 O -0.32 -8.71 11.11 -96.23 -1.07 -9.78 15 20 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 21 H 0.00 0.13 7.67 -2.39 -0.02 0.11 15 22 H 0.00 0.15 7.66 -2.39 -0.02 0.13 15 23 H 0.12 5.40 6.30 -2.91 -0.02 5.38 15 24 H 0.14 4.27 8.06 -2.91 -0.02 4.25 15 25 H 0.14 4.49 8.06 -2.91 -0.02 4.47 15 26 H 0.11 1.58 8.14 -2.38 -0.02 1.56 15 27 H 0.11 1.64 8.14 -2.38 -0.02 1.62 15 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 15 29 H 0.14 1.35 8.14 -2.39 -0.02 1.33 15 Total: -1.00 -67.87 255.39 4.11 -63.76 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.15 Total: 6.17 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 2.66 Total: -33.20 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.28 Total: -54.47 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -2.01 Total: -27.98 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.87 4.11 -63.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143686166.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.865 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds