Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47155 * 239.99718 * 3 2 1 5 5 H 1.48502 * 109.46818 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47011 * 119.99893 * 3 2 1 7 7 C 1.37881 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99722 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.51426 * 59.89851 * 9 7 2 11 11 N 1.47057 * 109.51583 * 180.02562 * 9 7 2 12 12 C 1.38819 * 118.01126 * 77.98319 * 11 9 7 13 13 N 1.32349 * 121.94860 * 209.24033 * 12 11 9 14 14 C 1.32074 * 120.22354 * 179.47603 * 13 12 11 15 15 N 1.31732 * 122.12216 * 0.02562 * 14 13 12 16 16 C 1.32770 * 121.26157 * 0.10608 * 15 14 13 17 17 C 1.38276 * 118.63959 * 359.97438 * 16 15 14 18 18 N 1.39745 * 121.75436 * 179.56826 * 17 16 15 19 19 C 1.34813 * 120.34793 * 166.21023 * 18 17 16 20 20 O 1.21294 * 119.66394 * 177.25006 * 19 18 17 21 21 H 0.96992 * 119.99956 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.99415 * 257.96783 * 11 9 7 23 23 H 1.08006 * 118.93755 * 179.97438 * 14 13 12 24 24 H 1.08002 * 120.68026 * 180.02562 * 16 15 14 25 25 H 0.97010 * 119.82077 * 346.20403 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6224 -2.5566 -0.8891 11 7 2.2058 -3.6176 -0.0005 12 6 2.8231 -3.9479 1.1982 13 7 4.0314 -4.4864 1.2386 14 6 4.5910 -4.7777 2.3989 15 7 3.9841 -4.5507 3.5459 16 6 2.7698 -4.0155 3.5888 17 6 2.1441 -3.6955 2.3979 18 7 0.8631 -3.1379 2.3668 19 6 0.3889 -2.5835 1.2332 20 8 -0.7429 -2.1480 1.2057 21 1 -0.4850 0.8400 -0.0004 22 1 2.3982 -4.1101 -0.8138 23 1 5.5776 -5.2170 2.4077 24 1 2.2811 -3.8330 4.5345 25 1 0.3122 -3.1500 3.1653 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200040385.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 4.717193 kcal Electronic energy + Delta-G solvation = -14735.015479 eV Core-core repulsion = 12133.930485 eV Total energy + Delta-G solvation = -2601.084994 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.30857 -40.29457 -37.28519 -36.14070 -34.91706 -33.32281 -31.07240 -28.87942 -25.61378 -25.03537 -24.95664 -21.13868 -19.39928 -19.03429 -18.90710 -17.90434 -17.04398 -16.75571 -16.41686 -15.66253 -15.41104 -14.90905 -14.58971 -14.36257 -13.89591 -13.17032 -12.86485 -12.54837 -12.36970 -12.17891 -12.06213 -11.76494 -11.05833 -10.71499 -10.15979 -9.95752 -8.62066 -8.20721 -6.52661 0.09734 0.31408 1.36454 1.36937 1.46138 1.83641 2.21851 2.25865 2.41427 2.98509 3.02147 3.42929 3.51932 3.64767 4.01178 4.38618 4.60256 4.80430 5.35370 5.51936 5.54125 5.73925 5.97555 6.21186 6.25461 6.59854 6.77003 7.18572 7.31571 7.42108 8.70834 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.032923 B = 0.011253 C = 0.009998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.264804 B = 2487.608518 C = 2800.018287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.023 3.977 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.063 0.937 9 C 0.279 3.721 10 H 0.067 0.933 11 N -0.709 5.709 12 C 0.403 3.597 13 N -0.561 5.561 14 C 0.293 3.707 15 N -0.541 5.541 16 C 0.130 3.870 17 C 0.004 3.996 18 N -0.654 5.654 19 C 0.511 3.489 20 O -0.531 6.531 21 H 0.267 0.733 22 H 0.413 0.587 23 H 0.230 0.770 24 H 0.196 0.804 25 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -7.092 4.746 10.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.183 4.183 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.601 4.601 8 H 0.081 0.919 9 C 0.171 3.829 10 H 0.085 0.915 11 N -0.346 5.346 12 C 0.155 3.845 13 N -0.285 5.285 14 C 0.003 3.997 15 N -0.258 5.258 16 C -0.034 4.034 17 C -0.102 4.102 18 N -0.301 5.301 19 C 0.299 3.701 20 O -0.403 6.403 21 H 0.077 0.923 22 H 0.251 0.749 23 H 0.246 0.754 24 H 0.213 0.787 25 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.772 -6.939 4.537 10.102 hybrid contribution -0.795 1.280 -0.141 1.513 sum 4.977 -5.659 4.396 8.724 Atomic orbital electron populations 1.70286 1.06780 1.28162 1.45425 1.25874 0.95762 1.02850 0.93847 0.85557 0.78374 0.78434 0.79074 1.18767 1.20469 1.20101 1.21337 0.93202 0.89912 1.55650 0.91897 1.18849 0.86339 0.85277 0.92411 0.91531 1.44594 1.45835 1.36035 1.08098 1.18478 0.88536 0.90811 0.86645 1.68124 1.07625 1.20346 1.32378 1.25299 1.00327 0.92785 0.81242 1.68398 1.09446 1.17310 1.30678 1.22999 0.90399 0.93672 0.96348 1.19319 0.88713 1.05722 0.96397 1.43414 1.14437 1.57547 1.14701 1.22176 0.87316 0.74610 0.86043 1.90661 1.20336 1.44912 1.84440 0.92335 0.74927 0.75447 0.78706 0.75265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.92 11.07 21.45 0.24 -49.68 15 2 C 0.02 1.21 5.30 84.66 0.45 1.66 15 3 Si 0.96 42.52 29.54 68.60 2.03 44.54 15 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 7 C -0.56 -29.65 8.66 25.60 0.22 -29.43 15 8 H 0.06 3.36 7.81 -2.91 -0.02 3.34 15 9 C 0.28 13.45 3.18 43.41 0.14 13.58 15 10 H 0.07 3.41 8.14 -2.39 -0.02 3.39 15 11 N -0.71 -28.33 5.54 -329.78 -1.83 -30.16 15 12 C 0.40 15.40 7.42 133.39 0.99 16.39 15 13 N -0.56 -19.19 10.49 -197.22 -2.07 -21.26 15 14 C 0.29 8.27 12.27 180.82 2.22 10.49 15 15 N -0.54 -15.70 10.42 -199.84 -2.08 -17.79 15 16 C 0.13 3.80 11.24 84.56 0.95 4.75 15 17 C 0.00 0.16 6.60 38.35 0.25 0.41 15 18 N -0.65 -25.43 5.40 -303.01 -1.64 -27.07 15 19 C 0.51 24.72 6.68 87.67 0.59 25.30 15 20 O -0.53 -29.31 16.00 -3.07 -0.05 -29.36 15 21 H 0.27 14.71 8.31 -92.71 -0.77 13.94 15 22 H 0.41 14.41 8.96 -92.71 -0.83 13.58 15 23 H 0.23 4.36 8.06 -2.91 -0.02 4.34 15 24 H 0.20 4.20 8.06 -2.91 -0.02 4.17 15 25 H 0.41 13.47 8.86 -92.70 -0.82 12.65 15 Total: -1.00 -65.48 229.34 0.01 -65.46 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.39 Total: 22.15 kcal Atomic # 6 Polarization: 37.35 SS G_CDS: 5.81 Total: 43.16 kcal Atomic # 7 Polarization: -138.57 SS G_CDS: -7.38 Total: -145.95 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.48 0.01 -65.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200040385.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.181 kcal (2) G-P(sol) polarization free energy of solvation -65.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds