Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99429 * 2 1 4 4 H 1.48505 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47228 * 299.99497 * 3 2 1 6 6 H 1.48500 * 109.47261 * 59.99587 * 3 2 1 7 7 C 1.37872 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00443 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47345 * 179.97438 * 9 7 2 11 11 C 1.34926 * 126.48002 * 264.99242 * 10 9 7 12 12 N 1.30770 * 109.73916 * 180.02562 * 11 10 9 13 13 C 1.33686 * 109.76347 * 0.02562 * 12 11 10 14 14 N 1.37683 * 134.33918 * 180.02562 * 13 12 11 15 15 H 0.97000 * 119.96891 * 359.97438 * 14 13 12 16 16 C 1.34644 * 120.07294 * 180.02562 * 14 13 12 17 17 N 1.30483 * 122.28363 * 359.97392 * 16 14 13 18 18 C 1.34678 * 121.45353 * 359.97033 * 17 16 14 19 19 O 1.22132 * 120.49320 * 179.97438 * 18 17 16 20 20 C 1.37756 * 126.47911 * 84.99694 * 10 9 7 21 21 H 0.96997 * 120.00952 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46909 * 59.98791 * 9 7 2 23 23 H 1.09005 * 109.46772 * 299.99886 * 9 7 2 24 24 H 1.07996 * 125.12807 * 0.02562 * 11 10 9 25 25 H 1.07998 * 118.86370 * 179.69476 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8901 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.6527 -4.2837 -1.0802 12 7 3.4911 -5.2145 -0.7049 13 6 3.6248 -5.1929 0.6251 14 7 4.3568 -5.9276 1.5306 15 1 4.9333 -6.6434 1.2206 16 6 4.2726 -5.6541 2.8463 17 7 3.5118 -4.7023 3.3131 18 6 2.7641 -3.9359 2.4961 19 8 2.0577 -3.0500 2.9519 20 6 2.8090 -4.1722 1.1040 21 1 -0.4851 0.8399 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6243 -2.5567 0.8904 24 1 2.3635 -4.0826 -2.1011 25 1 4.8516 -6.2459 3.5399 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207526620.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = 57.373868 kcal Electronic energy + Delta-G solvation = -14454.437853 eV Core-core repulsion = 11855.636223 eV Total energy + Delta-G solvation = -2598.801629 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.18184 -39.19004 -37.21820 -34.07306 -32.85923 -31.95824 -29.51546 -27.43277 -24.18032 -23.64807 -22.59987 -21.03213 -18.23835 -17.61674 -17.42137 -16.80109 -15.61452 -15.25211 -15.00157 -14.31949 -13.73382 -13.61656 -12.97057 -12.85508 -12.25568 -11.85619 -11.13982 -10.91840 -10.70862 -10.36587 -10.18344 -9.93053 -9.48436 -8.86776 -8.83501 -8.63452 -7.62122 -6.27734 -4.34862 1.39673 1.89365 2.68262 3.18672 3.21898 3.30074 3.33693 3.45537 4.27957 4.35212 4.39410 4.71420 5.07340 5.10146 5.23382 5.44384 5.95166 6.20156 6.67862 6.86894 7.02894 7.28677 7.56897 7.75958 7.81599 8.05769 8.26088 8.65961 8.67376 9.31523 10.81520 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.036947 B = 0.009425 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.659072 B = 2970.102934 C = 3302.335226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.229 3.771 10 N -0.376 5.376 11 C 0.237 3.763 12 N -0.517 5.517 13 C 0.235 3.765 14 N -0.590 5.590 15 H 0.418 0.582 16 C 0.414 3.586 17 N -0.591 5.591 18 C 0.545 3.455 19 O -0.482 6.482 20 C -0.124 4.124 21 H 0.268 0.732 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.218 0.782 25 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 -11.976 -0.038 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.111 3.889 10 N -0.052 5.052 11 C -0.047 4.047 12 N -0.242 5.242 13 C 0.003 3.997 14 N -0.215 5.215 15 H 0.254 0.746 16 C 0.123 3.877 17 N -0.335 5.335 18 C 0.334 3.666 19 O -0.356 6.356 20 C -0.249 4.249 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.234 0.766 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 7.394 -11.203 0.412 13.429 hybrid contribution 0.365 0.938 -0.596 1.170 sum 7.759 -10.265 -0.184 12.868 Atomic orbital electron populations 1.69915 1.06073 1.27709 1.48787 1.24888 0.94988 0.99520 0.94062 0.86257 0.79924 0.82383 0.77852 1.19634 1.20599 1.20446 1.21132 0.93446 0.89318 1.53542 0.91866 1.20112 0.86786 0.81207 1.00745 1.45875 1.30644 1.24645 1.04072 1.24955 0.94791 0.90409 0.94584 1.69573 1.21823 1.24573 1.08190 1.18183 0.97270 0.94660 0.89624 1.41603 1.41518 1.33410 1.04984 0.74591 1.24729 0.90547 0.91059 0.81374 1.69427 1.15968 1.11521 1.36555 1.16879 0.82376 0.84030 0.83333 1.90923 1.37016 1.28867 1.78824 1.21097 1.07326 1.02948 0.93522 0.92201 0.92549 0.91797 0.76590 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -25.00 15 2 C 0.07 1.96 5.46 -17.82 -0.10 1.86 15 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 15 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.54 -15.10 9.39 -34.44 -0.32 -15.43 15 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 15 9 C 0.23 5.88 5.64 -5.20 -0.03 5.85 15 10 N -0.38 -8.41 2.76 -116.99 -0.32 -8.74 15 11 C 0.24 4.34 12.49 -90.26 -1.13 3.21 15 12 N -0.52 -9.21 11.21 -13.48 -0.15 -9.36 15 13 C 0.23 4.15 8.47 -155.17 -1.31 2.83 15 14 N -0.59 -6.94 5.35 -13.63 -0.07 -7.01 15 15 H 0.42 3.00 8.93 -40.82 -0.36 2.63 15 16 C 0.41 4.69 12.31 -90.75 -1.12 3.58 15 17 N -0.59 -10.77 10.44 -16.14 -0.17 -10.94 15 18 C 0.54 12.74 7.75 -15.15 -0.12 12.63 15 19 O -0.48 -13.56 17.09 4.80 0.08 -13.48 15 20 C -0.12 -2.73 6.92 -83.71 -0.58 -3.31 15 21 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.06 1.39 8.13 -51.93 -0.42 0.96 15 23 H 0.06 1.84 7.54 -51.93 -0.39 1.45 15 24 H 0.22 3.07 8.06 -52.49 -0.42 2.65 15 25 H 0.21 0.91 8.06 -52.49 -0.42 0.49 15 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -37.22 236.26 -7.63 -44.85 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: -1.57 Total: -1.95 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: -4.71 Total: 11.23 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.02 Total: -61.04 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -37.22 -7.63 -44.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207526620.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.223 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds