Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48497 * 109.47089 * 240.00161 * 3 2 1 5 5 H 1.48498 * 109.47112 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47111 * 119.99903 * 3 2 1 7 7 C 1.38645 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00314 * 179.97438 * 7 2 1 9 9 O 1.34812 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.35638 * 117.00295 * 185.08350 * 9 7 2 11 11 C 1.38733 * 120.14653 * 354.30750 * 10 9 7 12 12 C 1.38121 * 120.06904 * 180.02562 * 11 10 9 13 13 C 1.38474 * 120.37044 * 359.97252 * 12 11 10 14 14 C 1.37960 * 120.29324 * 359.74515 * 13 12 11 15 15 C 1.39500 * 119.92158 * 0.53295 * 14 13 12 16 16 C 1.47677 * 120.17716 * 179.74126 * 15 14 13 17 17 C 1.32672 * 120.00092 * 38.77329 * 16 15 14 18 18 C 1.50704 * 120.00065 * 6.99452 * 17 16 15 19 19 O 1.42898 * 109.46884 * 135.89752 * 18 17 16 20 20 H 0.96998 * 119.99935 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.96584 * 0.02562 * 11 10 9 22 22 H 1.08002 * 119.81398 * 179.97438 * 12 11 10 23 23 H 1.08001 * 119.85563 * 179.97438 * 13 12 11 24 24 H 1.08003 * 120.03637 * 180.24818 * 14 13 12 25 25 H 1.07996 * 120.00214 * 218.76144 * 16 15 14 26 26 H 1.08001 * 119.99853 * 187.00428 * 17 16 15 27 27 H 1.09001 * 109.47227 * 255.90296 * 18 17 16 28 28 H 1.09003 * 109.46500 * 15.90201 * 18 17 16 29 29 H 0.96706 * 113.99788 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0696 -3.5034 0.1060 11 6 3.4554 -3.4405 0.0900 12 6 4.2019 -4.5976 0.1981 13 6 3.5752 -5.8260 0.3235 14 6 2.1981 -5.9055 0.3470 15 6 1.4321 -4.7452 0.2328 16 6 -0.0425 -4.8243 0.2516 17 6 -0.6508 -5.6758 1.0671 18 6 0.1498 -6.4478 2.0841 19 8 -0.5343 -6.4341 3.3387 20 1 -0.4850 0.8400 -0.0004 21 1 3.9510 -2.4859 -0.0071 22 1 5.2805 -4.5439 0.1847 23 1 4.1671 -6.7255 0.4070 24 1 1.7136 -6.8653 0.4490 25 1 -0.6256 -4.1889 -0.3984 26 1 -1.7197 -5.8159 1.0019 27 1 0.2696 -7.4773 1.7468 28 1 1.1307 -5.9868 2.2001 29 1 -0.0751 -6.9129 4.0423 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212001013.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -56.806190 kcal Electronic energy + Delta-G solvation = -14314.021361 eV Core-core repulsion = 11781.516105 eV Total energy + Delta-G solvation = -2532.505256 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.91421 -38.66592 -37.63327 -35.16726 -34.31030 -30.81787 -30.47057 -27.34446 -27.02757 -23.40813 -23.03617 -20.32194 -19.85843 -18.47573 -18.26236 -16.80064 -16.45638 -16.15880 -16.02209 -15.47261 -15.23053 -14.99890 -14.37788 -13.86484 -13.58139 -13.53815 -13.07798 -12.66608 -12.50701 -12.32183 -12.14309 -11.84255 -11.38607 -11.09639 -10.82339 -10.39905 -9.41972 -8.80300 -8.48508 -6.16074 0.22342 0.71735 1.33689 1.43454 1.46017 1.50179 2.16352 2.83687 3.17041 3.47644 3.57390 3.96496 4.10813 4.25547 4.30076 4.43238 4.51499 4.61675 4.64610 4.88222 5.06070 5.11657 5.26461 5.48870 5.53757 5.74165 5.75556 5.84835 6.03213 6.22565 6.95002 6.95797 7.76921 8.74096 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.028937 B = 0.008536 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.392367 B = 3279.619637 C = 3950.999025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.019 2.981 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.417 4.417 8 H 0.102 0.898 9 O -0.221 6.221 10 C 0.119 3.881 11 C -0.250 4.250 12 C -0.068 4.068 13 C -0.192 4.192 14 C -0.062 4.062 15 C -0.155 4.155 16 C -0.090 4.090 17 C -0.171 4.171 18 C 0.106 3.894 19 O -0.594 6.594 20 H 0.273 0.727 21 H 0.119 0.881 22 H 0.147 0.853 23 H 0.157 0.843 24 H 0.151 0.849 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -11.303 2.659 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.493 4.493 8 H 0.119 0.881 9 O -0.127 6.127 10 C 0.068 3.932 11 C -0.269 4.269 12 C -0.086 4.086 13 C -0.210 4.210 14 C -0.080 4.080 15 C -0.156 4.156 16 C -0.108 4.108 17 C -0.189 4.189 18 C 0.030 3.970 19 O -0.403 6.403 20 H 0.082 0.918 21 H 0.137 0.863 22 H 0.164 0.836 23 H 0.174 0.826 24 H 0.169 0.831 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.625 -10.772 2.297 12.367 hybrid contribution 0.310 0.928 0.052 0.980 sum 5.934 -9.844 2.349 11.732 Atomic orbital electron populations 1.70188 1.08056 1.28878 1.48455 1.26595 0.96822 1.02755 0.95742 0.84651 0.77400 0.74238 0.79947 1.18037 1.19671 1.18193 1.21813 0.92563 0.81512 1.53423 0.88082 1.83909 1.35804 1.12388 1.80583 1.20099 0.91551 0.87643 0.93932 1.21293 0.92914 1.00518 1.12197 1.21271 1.00379 0.91449 0.95474 1.21152 0.94076 0.98223 1.07555 1.21336 0.94110 0.96170 0.96375 1.18557 0.93426 0.91304 1.12310 1.21405 0.92783 0.96368 1.00273 1.23032 1.00250 0.99162 0.96465 1.21496 0.93617 0.99212 0.82672 1.86445 1.52666 1.79555 1.21638 0.91841 0.86333 0.83570 0.82555 0.83137 0.88859 0.86067 0.89751 0.92634 0.75193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.03 13.67 21.61 0.30 -56.73 15 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 15 3 Si 1.02 43.15 29.55 68.60 2.03 45.18 15 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.42 -24.51 9.49 67.92 0.64 -23.86 15 8 H 0.10 5.43 5.21 -2.91 -0.02 5.41 15 9 O -0.22 -13.41 9.21 -21.32 -0.20 -13.61 15 10 C 0.12 5.98 6.65 22.86 0.15 6.14 15 11 C -0.25 -10.84 9.16 22.36 0.20 -10.63 15 12 C -0.07 -2.23 10.03 22.30 0.22 -2.00 15 13 C -0.19 -5.52 10.03 22.26 0.22 -5.30 15 14 C -0.06 -2.00 7.44 22.51 0.17 -1.84 15 15 C -0.15 -6.60 5.10 -20.01 -0.10 -6.71 15 16 C -0.09 -3.81 9.34 23.60 0.22 -3.59 15 17 C -0.17 -6.04 9.85 24.52 0.24 -5.80 15 18 C 0.11 3.04 5.70 71.24 0.41 3.44 15 19 O -0.59 -16.89 13.64 -148.98 -2.03 -18.92 15 20 H 0.27 15.56 8.31 -92.71 -0.77 14.79 15 21 H 0.12 5.22 5.64 -2.91 -0.02 5.21 15 22 H 0.15 3.67 8.06 -2.91 -0.02 3.65 15 23 H 0.16 3.11 8.06 -2.91 -0.02 3.09 15 24 H 0.15 3.73 6.16 -2.91 -0.02 3.72 15 25 H 0.09 4.40 8.06 -2.91 -0.02 4.37 15 26 H 0.12 4.00 8.06 -2.91 -0.02 3.98 15 27 H 0.08 1.77 7.63 -2.39 -0.02 1.75 15 28 H 0.06 1.71 5.36 -2.39 -0.01 1.70 15 29 H 0.40 6.69 9.12 -74.05 -0.68 6.02 15 Total: -1.00 -74.15 255.33 3.44 -70.71 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.50 Total: 24.29 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 2.85 Total: -50.91 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.30 Total: -56.73 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -2.23 Total: -32.53 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.15 3.44 -70.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212001013.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.902 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds