Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21293 * 119.99924 * 2 1 4 4 N 1.34777 * 120.00260 * 179.71910 * 2 1 3 5 5 C 1.39685 * 119.99913 * 180.27688 * 4 2 1 6 6 N 1.31326 * 125.64237 * 0.02562 * 5 4 2 7 7 N 1.39891 * 109.61578 * 179.97438 * 6 5 4 8 8 H 0.96996 * 125.91057 * 179.97438 * 7 6 5 9 9 C 1.37278 * 108.18317 * 0.02562 * 7 6 5 10 10 C 1.39458 * 126.70563 * 179.97438 * 9 7 6 11 11 H 1.08008 * 119.99569 * 179.97438 * 10 9 7 12 12 C 1.40540 * 120.00566 * 359.97438 * 10 9 7 13 13 N 1.30537 * 119.99539 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00129 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47062 * 90.00169 * 14 12 10 16 16 H 1.48507 * 109.47111 * 210.00019 * 14 12 10 17 17 H 1.48501 * 109.47357 * 329.99906 * 14 12 10 18 18 C 1.40937 * 125.64154 * 179.72055 * 5 4 2 19 19 C 1.43200 * 126.54863 * 359.97438 * 18 5 4 20 20 N 5.20301 * 113.88466 * 179.53277 * 2 1 3 21 21 H 1.09000 * 109.46966 * 90.00456 * 1 2 3 22 22 H 1.09003 * 109.46772 * 210.00093 * 1 2 3 23 23 H 1.08996 * 109.47586 * 330.00145 * 1 2 3 24 24 H 0.97000 * 120.00317 * 0.28381 * 4 2 1 25 25 H 0.97006 * 119.99955 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5777 -1.1670 0.0116 6 7 4.3429 -0.0997 0.0126 7 7 5.6875 -0.4859 0.0196 8 1 6.4511 0.1122 0.0213 9 6 5.7392 -1.8577 0.0224 10 6 6.8879 -2.6485 0.0287 11 1 6.8022 -3.7251 0.0308 12 6 8.1569 -2.0445 0.0324 13 7 8.2604 -0.7433 0.0294 14 14 9.6954 -3.1039 0.0416 15 1 10.1090 -3.3883 -1.3560 16 1 10.7879 -2.3840 0.7444 17 1 9.4127 -4.3814 0.7439 18 6 4.3990 -2.3123 0.0234 19 6 3.9611 -3.6757 0.0322 20 7 3.6137 -4.7573 0.0388 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.6960 -2.0073 0.0057 25 1 9.1363 -0.3264 0.0323 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214475362.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = 19.081459 kcal Electronic energy + Delta-G solvation = -13987.247492 eV Core-core repulsion = 11386.785379 eV Total energy + Delta-G solvation = -2600.462113 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.55397 -40.09609 -36.95327 -36.30110 -35.29146 -31.75269 -31.42011 -29.68279 -27.76827 -23.45985 -22.77332 -20.89601 -20.55431 -18.41591 -17.57013 -16.98895 -16.58675 -16.44808 -16.08098 -15.15915 -14.78975 -14.69973 -13.86682 -13.71048 -13.63926 -13.32258 -13.19515 -13.01810 -12.93986 -12.76163 -11.96126 -11.93708 -11.34797 -11.26720 -10.65120 -9.66683 -9.11767 -9.02809 -6.94000 0.99359 1.25127 1.40411 1.56640 1.69440 1.92521 2.08057 2.10739 2.12572 2.71607 2.88632 3.26821 3.78127 4.02903 4.49872 4.68419 4.72238 4.86854 4.96622 5.10333 5.16665 5.69388 5.95688 6.20795 6.40311 6.52611 7.09089 7.20535 7.29584 7.59256 7.95450 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.041733 B = 0.008194 C = 0.006875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.764896 B = 3416.137931 C = 4071.752877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.491 3.509 3 O -0.557 6.557 4 N -0.631 5.631 5 C 0.341 3.659 6 N -0.369 5.369 7 N -0.501 5.501 8 H 0.445 0.555 9 C 0.304 3.696 10 C -0.445 4.445 11 H 0.102 0.898 12 C 0.044 3.956 13 N -0.820 5.820 14 Si 1.011 2.989 15 H -0.256 1.256 16 H -0.258 1.258 17 H -0.258 1.258 18 C -0.370 4.370 19 C 0.335 3.665 20 N -0.529 5.529 21 H 0.117 0.883 22 H 0.111 0.889 23 H 0.102 0.898 24 H 0.427 0.573 25 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -0.550 -0.092 4.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.281 3.719 3 O -0.431 6.431 4 N -0.282 5.282 5 C 0.079 3.921 6 N -0.196 5.196 7 N -0.224 5.224 8 H 0.300 0.700 9 C 0.177 3.823 10 C -0.480 4.480 11 H 0.120 0.880 12 C -0.176 4.176 13 N -0.448 5.448 14 Si 0.830 3.170 15 H -0.181 1.181 16 H -0.182 1.182 17 H -0.181 1.181 18 C -0.389 4.389 19 C 0.027 3.973 20 N -0.212 5.212 21 H 0.135 0.865 22 H 0.130 0.870 23 H 0.121 0.879 24 H 0.266 0.734 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.510 0.105 -0.079 4.512 hybrid contribution 1.038 -0.666 -0.010 1.233 sum -3.472 -0.560 -0.089 3.518 Atomic orbital electron populations 1.21893 0.85542 1.06840 1.06823 1.22265 0.92941 0.82208 0.74535 1.90791 1.71798 1.32339 1.48197 1.43103 1.01357 1.11155 1.72566 1.18872 0.84956 0.90667 0.97587 1.77174 0.88551 1.20323 1.33554 1.46888 1.04491 1.05022 1.66022 0.70026 1.18693 0.92262 0.83801 0.87525 1.19379 0.89099 0.95732 1.43799 0.87955 1.27158 1.04569 0.96609 0.89254 1.68645 1.30588 1.12209 1.33330 0.84716 0.74050 0.78213 0.80060 1.18074 1.18174 1.18125 1.15471 0.91826 0.85069 1.46571 1.24521 0.91780 0.91239 0.89775 1.81063 1.09975 1.10998 1.19146 0.86453 0.87010 0.87889 0.73406 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.30 71.23 0.73 -2.03 15 2 C 0.49 16.65 7.90 87.66 0.69 17.35 15 3 O -0.56 -25.24 15.79 -3.07 -0.05 -25.29 15 4 N -0.63 -22.64 5.43 -307.40 -1.67 -24.31 15 5 C 0.34 16.03 7.75 133.59 1.04 17.07 15 6 N -0.37 -19.32 10.78 -54.35 -0.59 -19.91 15 7 N -0.50 -25.88 7.07 -50.83 -0.36 -26.24 15 8 H 0.44 22.42 6.32 -213.46 -1.35 21.08 15 9 C 0.30 15.50 6.80 39.39 0.27 15.76 15 10 C -0.45 -21.35 9.13 23.13 0.21 -21.13 15 11 H 0.10 4.80 7.76 -2.91 -0.02 4.77 15 12 C 0.04 1.86 5.50 85.45 0.47 2.33 15 13 N -0.82 -35.62 10.72 21.93 0.23 -35.38 15 14 Si 1.01 32.45 29.56 68.60 2.03 34.48 15 15 H -0.26 -7.99 7.11 99.48 0.71 -7.29 15 16 H -0.26 -7.69 7.11 99.48 0.71 -6.98 15 17 H -0.26 -8.34 7.11 99.48 0.71 -7.64 15 18 C -0.37 -17.92 6.07 -20.56 -0.12 -18.05 15 19 C 0.33 15.29 15.25 88.33 1.35 16.64 15 20 N -0.53 -23.91 18.54 19.00 0.35 -23.56 15 21 H 0.12 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.11 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.43 12.13 8.56 -92.71 -0.79 11.34 15 25 H 0.31 11.90 8.29 -92.70 -0.77 11.14 15 Total: -1.00 -64.90 243.26 3.72 -61.18 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.87 Total: 31.09 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 4.63 Total: 27.93 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -2.03 Total: -129.40 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 32.45 SS G_CDS: 2.03 Total: 34.48 kcal Total: -64.90 3.72 -61.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214475362.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.264 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds