Wall clock time and date at job start Mon Mar 30 2020 02:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39425 * 126.64243 * 2 1 4 4 C 1.41309 * 126.17158 * 359.97178 * 3 2 1 5 5 H 1.08002 * 120.00339 * 5.92853 * 4 3 2 6 6 C 1.39717 * 119.99872 * 185.92834 * 4 3 2 7 7 N 1.30984 * 119.99619 * 183.58774 * 6 4 3 8 8 Si 1.86792 * 120.00032 * 3.58972 * 6 4 3 9 9 H 1.48505 * 109.47086 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.47409 * 300.00019 * 8 6 4 11 11 H 1.48505 * 109.47302 * 60.00038 * 8 6 4 12 12 N 1.34747 * 107.65497 * 179.70455 * 3 2 1 13 13 C 1.32473 * 109.16335 * 0.26305 * 12 3 2 14 14 C 1.41271 * 131.62954 * 180.02562 * 13 12 3 15 15 F 1.35105 * 120.31440 * 359.95938 * 14 13 12 16 16 C 1.36171 * 119.37664 * 179.97438 * 14 13 12 17 17 C 1.40553 * 119.72376 * 0.02562 * 16 14 13 18 18 C 1.34853 * 120.32143 * 359.97438 * 17 16 14 19 19 N 1.36165 * 126.63623 * 180.15352 * 2 1 3 20 20 H 1.08997 * 109.47682 * 90.01501 * 1 2 3 21 21 H 1.08999 * 109.47296 * 210.02418 * 1 2 3 22 22 H 1.08999 * 109.46997 * 330.02071 * 1 2 3 23 23 H 0.96996 * 120.00681 * 354.81706 * 7 6 4 24 24 H 1.07991 * 120.13620 * 180.02562 * 16 14 13 25 25 H 1.07993 * 119.83697 * 180.02562 * 17 16 14 26 26 H 1.07997 * 119.66127 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.1187 0.0000 4 6 1.9215 2.4687 -0.0006 5 1 0.8732 2.7098 0.0956 6 6 2.8650 3.4917 -0.1255 7 7 2.4865 4.7437 -0.0555 8 14 4.6659 3.0738 -0.3923 9 1 5.4554 4.3276 -0.4927 10 1 5.1615 2.2664 0.7513 11 1 4.8126 2.2951 -1.6483 12 7 3.6132 0.6803 0.0066 13 6 3.6173 -0.6444 0.0050 14 6 4.6761 -1.5796 0.0102 15 9 5.9593 -1.1569 0.0177 16 6 4.3912 -2.9112 0.0073 17 6 3.0519 -3.3373 -0.0014 18 6 2.0502 -2.4344 -0.0063 19 7 2.3195 -1.0926 -0.0029 20 1 -0.3634 -0.0003 -1.0276 21 1 -0.3634 -0.8897 0.5142 22 1 -0.3633 0.8902 0.5135 23 1 1.5437 4.9626 0.0075 24 1 5.1911 -3.6368 0.0117 25 1 2.8238 -4.3929 -0.0032 26 1 1.0249 -2.7736 -0.0126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214541817.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:31 Heat of formation + Delta-G solvation = -1.536291 kcal Electronic energy + Delta-G solvation = -14481.252585 eV Core-core repulsion = 11859.976458 eV Total energy + Delta-G solvation = -2621.276127 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.88275 -43.25036 -38.17727 -35.48801 -34.39799 -32.23855 -30.64922 -28.38359 -26.88870 -23.65935 -23.28426 -21.60820 -20.04457 -18.55721 -18.31397 -17.23173 -17.19463 -16.38536 -15.97518 -15.79903 -15.06655 -14.83403 -14.17567 -13.97641 -13.73390 -13.45204 -13.32772 -12.94975 -12.81265 -12.36644 -12.18776 -11.60587 -11.42849 -11.25857 -10.21873 -9.68695 -9.28700 -8.54764 -6.58422 -0.17983 0.40244 1.41773 1.48587 1.77109 1.97852 2.06442 2.37784 2.52533 3.15011 3.24815 3.47414 3.83959 3.97816 4.22260 4.40069 4.59573 4.75541 4.81683 4.99342 5.06193 5.14238 5.23717 5.41838 5.50509 5.74967 6.00101 6.30994 6.51692 6.74417 7.23874 8.08805 Molecular weight = 220.07amu Principal moments of inertia in cm(-1) A = 0.030998 B = 0.013091 C = 0.009273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.060195 B = 2138.358718 C = 3018.741531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 C -0.200 4.200 3 C 0.187 3.813 4 C -0.509 4.509 5 H 0.075 0.925 6 C 0.021 3.979 7 N -0.854 5.854 8 Si 1.154 2.846 9 H -0.308 1.308 10 H -0.283 1.283 11 H -0.298 1.298 12 N -0.588 5.588 13 C 0.167 3.833 14 C 0.071 3.929 15 F -0.139 7.139 16 C -0.115 4.115 17 C -0.132 4.132 18 C 0.037 3.963 19 N -0.328 5.328 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.279 0.721 24 H 0.184 0.816 25 H 0.208 0.792 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -17.860 -0.139 17.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.311 4.311 3 C 0.062 3.938 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.193 4.193 7 N -0.480 5.480 8 Si 0.986 3.014 9 H -0.238 1.238 10 H -0.210 1.210 11 H -0.226 1.226 12 N -0.318 5.318 13 C -0.073 4.073 14 C 0.048 3.952 15 F -0.118 7.118 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.086 4.086 19 N 0.000 5.000 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.201 0.799 25 H 0.225 0.775 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.452 -16.559 -0.260 16.567 hybrid contribution -2.023 -0.221 0.180 2.043 sum -1.571 -16.779 -0.080 16.853 Atomic orbital electron populations 1.19731 0.84759 1.02462 1.01648 1.21691 0.94968 0.83690 1.30739 1.18796 0.86836 0.94107 0.94072 1.19810 0.96230 0.89360 1.48906 0.90695 1.27765 1.10056 0.91980 0.89493 1.70725 1.20509 1.19442 1.37323 0.82045 0.69928 0.71114 0.78349 1.23807 1.21018 1.22616 1.69973 1.23014 1.06856 1.31946 1.20952 0.85801 0.91049 1.09547 1.16682 0.76212 0.91558 1.10716 1.91438 1.34477 1.91406 1.94441 1.21413 1.00360 0.91447 1.00699 1.21018 0.89037 1.01815 1.03458 1.22505 1.03923 0.79032 1.03183 1.42242 1.06502 1.06723 1.44542 0.91992 0.90115 0.92183 0.91019 0.79876 0.77530 0.78647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.97 10.10 71.23 0.72 -0.25 15 2 C -0.20 -9.07 7.15 42.17 0.30 -8.77 15 3 C 0.19 10.41 6.40 39.74 0.25 10.67 15 4 C -0.51 -29.99 9.56 23.38 0.22 -29.77 15 5 H 0.07 4.37 7.48 -2.91 -0.02 4.34 15 6 C 0.02 1.26 5.51 85.18 0.47 1.73 15 7 N -0.85 -50.84 13.66 21.79 0.30 -50.54 15 8 Si 1.15 63.47 25.84 68.60 1.77 65.25 15 9 H -0.31 -16.05 7.11 99.48 0.71 -15.35 15 10 H -0.28 -16.01 6.75 99.48 0.67 -15.33 15 11 H -0.30 -16.68 7.11 99.48 0.71 -15.97 15 12 N -0.59 -33.03 6.53 -186.42 -1.22 -34.25 15 13 C 0.17 7.86 7.76 134.14 1.04 8.90 15 14 C 0.07 2.73 7.34 22.53 0.17 2.90 15 15 F -0.14 -5.67 17.28 44.97 0.78 -4.89 15 16 C -0.12 -2.88 10.04 22.35 0.22 -2.65 15 17 C -0.13 -2.57 9.98 22.06 0.22 -2.35 15 18 C 0.04 0.94 10.82 83.13 0.90 1.84 15 19 N -0.33 -13.15 2.93 -335.23 -0.98 -14.13 15 20 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.06 2.21 7.52 -2.39 -0.02 2.19 15 23 H 0.28 15.95 8.72 -92.71 -0.81 15.15 15 24 H 0.18 3.00 8.06 -2.92 -0.02 2.97 15 25 H 0.21 1.64 8.06 -2.91 -0.02 1.62 15 26 H 0.20 3.32 8.05 -2.91 -0.02 3.29 15 Total: -1.00 -75.64 236.05 6.30 -69.35 By element: Atomic # 1 Polarization: -14.17 SS G_CDS: 1.13 Total: -13.04 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.52 Total: -17.75 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -1.90 Total: -98.92 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.78 Total: -4.89 kcal Atomic # 14 Polarization: 63.47 SS G_CDS: 1.77 Total: 65.25 kcal Total: -75.64 6.30 -69.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214541817.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.813 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds