Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99539 * 2 1 4 4 H 1.48506 * 109.46777 * 239.99989 * 3 2 1 5 5 H 1.48496 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47232 * 120.00229 * 3 2 1 7 7 C 1.37877 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99653 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47340 * 299.99785 * 9 7 2 11 11 C 1.50698 * 109.47344 * 60.00073 * 9 7 2 12 12 O 1.20763 * 120.00324 * 119.99688 * 11 9 7 13 13 O 1.42899 * 109.46888 * 179.97438 * 9 7 2 14 14 C 1.42905 * 113.99778 * 149.99727 * 13 9 7 15 15 C 1.50699 * 109.46972 * 180.02562 * 14 13 9 16 16 C 1.38236 * 120.00277 * 269.73036 * 15 14 13 17 17 C 1.38231 * 120.00348 * 179.76818 * 16 15 14 18 18 C 1.38239 * 119.99843 * 0.50260 * 17 16 15 19 19 C 1.38229 * 119.99704 * 359.75174 * 18 17 16 20 20 C 1.38234 * 120.00615 * 359.97438 * 19 18 17 21 21 H 0.96992 * 120.00221 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99759 * 299.99993 * 11 9 7 23 23 H 1.09000 * 109.47187 * 300.00233 * 14 13 9 24 24 H 1.09001 * 109.46558 * 60.00281 * 14 13 9 25 25 H 1.08004 * 119.99728 * 359.97438 * 16 15 14 26 26 H 1.08001 * 119.99970 * 180.22692 * 17 16 15 27 27 H 1.07994 * 119.99845 * 179.72189 * 18 17 16 28 28 H 1.08006 * 120.00063 * 179.97438 * 19 18 17 29 29 H 1.07993 * 120.00649 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6242 -2.5575 0.8880 11 6 0.3852 -2.5782 -1.2325 12 8 0.5467 -3.4723 -2.0280 13 8 2.1798 -3.5852 -0.0027 14 6 1.6982 -4.7623 0.6491 15 6 2.7531 -5.8369 0.5892 16 6 2.7790 -6.7216 -0.4726 17 6 3.7495 -7.7043 -0.5300 18 6 4.6878 -7.8088 0.4797 19 6 4.6587 -6.9274 1.5442 20 6 3.6917 -5.9411 1.5987 21 1 -0.4850 0.8400 0.0004 22 1 -0.3797 -1.8352 -1.4032 23 1 1.4714 -4.5339 1.6905 24 1 0.7950 -5.1109 0.1484 25 1 2.0430 -6.6429 -1.2591 26 1 3.7719 -8.3932 -1.3615 27 1 5.4433 -8.5793 0.4371 28 1 5.3915 -7.0093 2.3333 29 1 3.6686 -5.2528 2.4305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214549202.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = -60.767582 kcal Electronic energy + Delta-G solvation = -14161.713092 eV Core-core repulsion = 11629.036058 eV Total energy + Delta-G solvation = -2532.677035 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.05710 -38.04724 -35.93477 -33.19074 -31.48054 -30.65456 -28.14067 -25.31938 -23.93413 -22.31302 -20.98873 -20.02983 -16.97705 -16.48295 -15.82065 -15.39634 -14.99363 -14.64917 -14.47359 -13.80982 -13.35148 -13.12742 -12.75918 -12.48601 -12.33832 -12.02777 -11.34124 -11.08597 -10.91404 -10.81027 -10.60039 -10.20875 -9.62929 -9.41777 -8.78860 -8.67888 -8.53527 -7.81575 -6.38545 -4.39499 1.55375 1.64598 3.19254 3.24947 3.27835 3.40766 3.95165 4.21475 4.87010 4.98772 5.10289 5.16135 5.30129 5.53710 5.66707 5.76201 5.94140 6.00888 6.08894 6.24705 6.32341 6.67673 6.70169 6.86400 6.93090 6.98122 7.23531 7.57094 7.72675 8.27043 8.58346 8.96365 9.24988 10.71548 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.040656 B = 0.006808 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.534406 B = 4111.967658 C = 4522.893170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.076 0.924 9 C 0.156 3.844 10 H 0.047 0.953 11 C 0.338 3.662 12 O -0.510 6.510 13 O -0.366 6.366 14 C 0.100 3.900 15 C -0.073 4.073 16 C -0.098 4.098 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.101 4.101 21 H 0.271 0.729 22 H 0.100 0.900 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -9.671 3.119 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.547 4.547 8 H 0.094 0.906 9 C 0.099 3.901 10 H 0.065 0.935 11 C 0.198 3.802 12 O -0.386 6.386 13 O -0.286 6.286 14 C 0.023 3.977 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.146 4.146 20 C -0.119 4.119 21 H 0.081 0.919 22 H 0.117 0.883 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.057 -9.995 2.618 11.101 hybrid contribution 0.073 1.053 0.161 1.068 sum 4.130 -8.942 2.779 10.234 Atomic orbital electron populations 1.69871 1.06002 1.28156 1.49405 1.25016 0.95231 0.99843 0.94114 0.86237 0.79302 0.81048 0.79130 1.19806 1.20892 1.19747 1.20888 0.94226 0.87597 1.51998 0.90608 1.20613 0.89246 0.85818 0.94457 0.93535 1.27256 0.83030 0.83050 0.86855 1.90182 1.66509 1.35578 1.46363 1.87995 1.42152 1.20805 1.77610 1.21219 0.93880 0.86041 0.96542 1.19820 0.97015 0.95708 0.94771 1.21160 0.98627 0.94494 0.97307 1.21104 0.95688 0.98883 0.98847 1.21088 0.98982 0.99476 0.94802 1.21084 0.98874 0.95993 0.98640 1.21110 0.94288 0.97667 0.98846 0.91887 0.88338 0.93354 0.93476 0.85809 0.86298 0.86500 0.86299 0.85912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.63 11.66 55.43 0.65 -22.98 15 2 C 0.06 1.58 5.30 -17.82 -0.09 1.49 15 3 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 15 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.51 -13.85 8.88 -34.44 -0.31 -14.16 15 8 H 0.08 2.09 7.81 -52.49 -0.41 1.68 15 9 C 0.16 4.00 2.66 -29.04 -0.08 3.92 15 10 H 0.05 1.19 7.79 -51.93 -0.40 0.79 15 11 C 0.34 8.59 10.47 36.00 0.38 8.97 15 12 O -0.51 -13.54 17.29 -13.97 -0.24 -13.79 15 13 O -0.37 -9.04 9.49 -55.20 -0.52 -9.56 15 14 C 0.10 2.01 5.83 36.01 0.21 2.22 15 15 C -0.07 -1.31 5.51 -104.62 -0.58 -1.88 15 16 C -0.10 -1.63 9.70 -39.58 -0.38 -2.01 15 17 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 15 18 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 15 19 C -0.13 -1.73 10.05 -39.59 -0.40 -2.13 15 20 C -0.10 -1.60 9.70 -39.58 -0.38 -1.98 15 21 H 0.27 6.75 8.31 -40.82 -0.34 6.42 15 22 H 0.10 2.50 6.80 -52.49 -0.36 2.14 15 23 H 0.05 0.89 8.03 -51.93 -0.42 0.47 15 24 H 0.05 0.93 8.08 -51.93 -0.42 0.51 15 25 H 0.12 2.05 8.06 -52.48 -0.42 1.63 15 26 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 27 H 0.12 1.17 8.06 -52.49 -0.42 0.75 15 28 H 0.12 1.28 8.06 -52.48 -0.42 0.86 15 29 H 0.12 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 264.61 15.07 3.99 3.99 Total: -1.00 -29.37 264.61 -6.84 -36.21 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.26 Total: 0.55 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.43 Total: -9.76 kcal Atomic # 7 Polarization: -23.63 SS G_CDS: 0.65 Total: -22.98 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.77 Total: -23.35 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.37 -6.84 -36.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214549202.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.558 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds