Wall clock time and date at job start Mon Mar 30 2020 03:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99539 * 2 1 4 4 H 1.48506 * 109.46777 * 239.99989 * 3 2 1 5 5 H 1.48496 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47232 * 120.00229 * 3 2 1 7 7 C 1.37877 * 120.00459 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99653 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47340 * 299.99785 * 9 7 2 11 11 C 1.50698 * 109.47344 * 60.00073 * 9 7 2 12 12 O 1.20763 * 120.00324 * 119.99688 * 11 9 7 13 13 O 1.42899 * 109.46888 * 179.97438 * 9 7 2 14 14 C 1.42905 * 113.99778 * 149.99727 * 13 9 7 15 15 C 1.50699 * 109.46972 * 180.02562 * 14 13 9 16 16 C 1.38236 * 120.00277 * 269.73036 * 15 14 13 17 17 C 1.38231 * 120.00348 * 179.76818 * 16 15 14 18 18 C 1.38239 * 119.99843 * 0.50260 * 17 16 15 19 19 C 1.38229 * 119.99704 * 359.75174 * 18 17 16 20 20 C 1.38234 * 120.00615 * 359.97438 * 19 18 17 21 21 H 0.96992 * 120.00221 * 359.97438 * 1 2 3 22 22 H 1.08000 * 119.99759 * 299.99993 * 11 9 7 23 23 H 1.09000 * 109.47187 * 300.00233 * 14 13 9 24 24 H 1.09001 * 109.46558 * 60.00281 * 14 13 9 25 25 H 1.08004 * 119.99728 * 359.97438 * 16 15 14 26 26 H 1.08001 * 119.99970 * 180.22692 * 17 16 15 27 27 H 1.07994 * 119.99845 * 179.72189 * 18 17 16 28 28 H 1.08006 * 120.00063 * 179.97438 * 19 18 17 29 29 H 1.07993 * 120.00649 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 1 0.6242 -2.5575 0.8880 11 6 0.3852 -2.5782 -1.2325 12 8 0.5467 -3.4723 -2.0280 13 8 2.1798 -3.5852 -0.0027 14 6 1.6982 -4.7623 0.6491 15 6 2.7531 -5.8369 0.5892 16 6 2.7790 -6.7216 -0.4726 17 6 3.7495 -7.7043 -0.5300 18 6 4.6878 -7.8088 0.4797 19 6 4.6587 -6.9274 1.5442 20 6 3.6917 -5.9411 1.5987 21 1 -0.4850 0.8400 0.0004 22 1 -0.3797 -1.8352 -1.4032 23 1 1.4714 -4.5339 1.6905 24 1 0.7950 -5.1109 0.1484 25 1 2.0430 -6.6429 -1.2591 26 1 3.7719 -8.3932 -1.3615 27 1 5.4433 -8.5793 0.4371 28 1 5.3915 -7.0093 2.3333 29 1 3.6686 -5.2528 2.4305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214549202.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:23 Heat of formation + Delta-G solvation = -76.811682 kcal Electronic energy + Delta-G solvation = -14162.408817 eV Core-core repulsion = 11629.036058 eV Total energy + Delta-G solvation = -2533.372759 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.48595 -39.83633 -37.80335 -35.17131 -32.85459 -31.79031 -30.06779 -26.81525 -25.98337 -23.45782 -22.27109 -22.02300 -18.89266 -17.92846 -17.59664 -17.14986 -16.51232 -16.20253 -16.09776 -15.55077 -15.05455 -14.50210 -14.32982 -14.09581 -13.83283 -13.57588 -12.98929 -12.93591 -12.73790 -12.20746 -11.97161 -11.79247 -11.59473 -11.28339 -10.78327 -9.84143 -9.80376 -9.74400 -8.38895 -6.49260 0.36341 0.50031 1.27333 1.45690 1.48425 1.56073 2.33483 2.73582 2.94866 3.32633 3.89152 3.97004 4.03880 4.15615 4.29669 4.34085 4.41467 4.66518 4.76061 4.82436 4.91157 5.07374 5.16452 5.51391 5.56116 5.58946 5.70119 5.73264 6.11274 6.36646 6.49923 6.92468 7.20165 8.71028 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.040656 B = 0.006808 C = 0.006189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.534406 B = 4111.967658 C = 4522.893170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.025 3.975 3 Si 0.980 3.020 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.158 3.842 10 H 0.042 0.958 11 C 0.344 3.656 12 O -0.524 6.524 13 O -0.389 6.389 14 C 0.098 3.902 15 C -0.104 4.104 16 C -0.120 4.120 17 C -0.127 4.127 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.115 4.115 21 H 0.279 0.721 22 H 0.104 0.896 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.111 0.889 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -10.119 3.559 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.100 3.900 10 H 0.060 0.940 11 C 0.205 3.795 12 O -0.401 6.401 13 O -0.308 6.308 14 C 0.022 3.978 15 C -0.105 4.105 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.134 4.134 19 C -0.142 4.142 20 C -0.133 4.133 21 H 0.088 0.912 22 H 0.120 0.880 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.130 0.870 26 H 0.164 0.836 27 H 0.174 0.826 28 H 0.170 0.830 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.556 -10.458 3.066 12.233 hybrid contribution -0.391 1.101 0.041 1.169 sum 5.165 -9.358 3.107 11.131 Atomic orbital electron populations 1.69924 1.06973 1.29403 1.48619 1.25783 0.96119 1.02689 0.93019 0.85268 0.78256 0.77085 0.79111 1.19837 1.19566 1.19114 1.21055 0.93900 0.88911 1.54025 0.91827 1.20492 0.89246 0.86163 0.94056 0.94034 1.27316 0.82807 0.82644 0.86685 1.90167 1.66951 1.36152 1.46816 1.87946 1.42564 1.21900 1.78438 1.21367 0.94751 0.85229 0.96457 1.19786 0.97965 0.96002 0.96703 1.21234 0.99797 0.95801 0.97002 1.21446 0.94755 0.98202 1.00054 1.21577 0.98813 0.99539 0.93511 1.21490 0.98334 0.94759 0.99616 1.21282 0.94667 0.98847 0.98527 0.91209 0.87979 0.92386 0.94257 0.87045 0.83566 0.82593 0.83019 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.76 11.66 21.45 0.25 -47.51 15 2 C 0.03 1.32 5.30 84.65 0.45 1.77 15 3 Si 0.98 41.12 29.54 68.60 2.03 43.15 15 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 7 C -0.54 -29.92 8.88 25.60 0.23 -29.70 15 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 15 9 C 0.16 8.33 2.66 29.10 0.08 8.41 15 10 H 0.04 2.21 7.79 -2.39 -0.02 2.19 15 11 C 0.34 17.92 10.47 71.24 0.75 18.67 15 12 O -0.52 -28.43 17.29 17.64 0.30 -28.13 15 13 O -0.39 -19.84 9.49 -129.89 -1.23 -21.07 15 14 C 0.10 4.10 5.83 71.24 0.42 4.51 15 15 C -0.10 -3.80 5.51 -19.87 -0.11 -3.91 15 16 C -0.12 -4.02 9.70 22.27 0.22 -3.80 15 17 C -0.13 -3.28 10.05 22.27 0.22 -3.05 15 18 C -0.12 -2.60 10.05 22.27 0.22 -2.38 15 19 C -0.12 -3.01 10.05 22.27 0.22 -2.79 15 20 C -0.12 -3.56 9.70 22.27 0.22 -3.35 15 21 H 0.28 13.59 8.31 -92.71 -0.77 12.82 15 22 H 0.10 5.27 6.80 -2.91 -0.02 5.25 15 23 H 0.06 2.23 8.03 -2.39 -0.02 2.21 15 24 H 0.04 1.65 8.08 -2.39 -0.02 1.63 15 25 H 0.11 3.86 8.06 -2.91 -0.02 3.83 15 26 H 0.15 2.89 8.06 -2.91 -0.02 2.87 15 27 H 0.16 2.28 8.06 -2.91 -0.02 2.26 15 28 H 0.15 2.64 8.06 -2.91 -0.02 2.62 15 29 H 0.13 3.67 8.06 -2.91 -0.02 3.65 15 Total: -1.00 -62.66 264.61 5.39 -57.27 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.13 Total: 11.90 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 2.91 Total: -15.61 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.25 Total: -47.51 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.93 Total: -49.20 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -62.66 5.39 -57.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214549202.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.540 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds