Wall clock time and date at job start Mon Mar 30 2020 03:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40772 * 120.13054 * 2 1 4 4 C 1.41201 * 120.19181 * 359.89129 * 3 2 1 5 5 H 1.08002 * 119.99926 * 25.55399 * 4 3 2 6 6 C 1.39878 * 120.00063 * 205.54895 * 4 3 2 7 7 N 1.30889 * 119.99601 * 15.42302 * 6 4 3 8 8 Si 1.86796 * 119.99928 * 195.41615 * 6 4 3 9 9 H 1.48500 * 109.47163 * 60.00252 * 8 6 4 10 10 H 1.48499 * 109.47245 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47549 * 300.00533 * 8 6 4 12 12 C 1.40809 * 119.61493 * 179.97438 * 3 2 1 13 13 C 1.36422 * 120.00958 * 0.11758 * 12 3 2 14 14 C 1.39309 * 120.49245 * 359.97438 * 13 12 3 15 15 C 1.37915 * 120.12502 * 179.97438 * 2 1 3 16 16 O 1.36106 * 119.29121 * 359.74515 * 15 2 1 17 17 C 1.43178 * 116.66987 * 162.79359 * 16 15 2 18 18 C 1.53458 * 108.24282 * 46.28016 * 17 16 15 19 19 O 1.35942 * 119.20873 * 179.58104 * 14 13 12 20 20 H 1.08997 * 109.47197 * 270.02628 * 1 2 3 21 21 H 1.09005 * 109.47115 * 30.02176 * 1 2 3 22 22 H 1.08999 * 109.47102 * 150.02658 * 1 2 3 23 23 H 0.97004 * 119.99531 * 180.02562 * 7 6 4 24 24 H 1.08001 * 119.99857 * 180.12022 * 12 3 2 25 25 H 1.08001 * 119.75133 * 180.02562 * 13 12 3 26 26 H 1.08997 * 109.71067 * 165.97592 * 17 16 15 27 27 H 1.09003 * 109.70868 * 286.60180 * 17 16 15 28 28 H 1.09005 * 109.69362 * 59.80126 * 18 17 16 29 29 H 1.09000 * 109.69858 * 180.35212 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2175 0.0000 4 6 1.5145 2.4443 -0.0023 5 1 0.5134 2.4961 0.3995 6 6 2.1187 3.5926 -0.5249 7 7 3.1860 3.4868 -1.2751 8 14 1.4021 5.2769 -0.1522 9 1 1.4090 5.5041 1.3153 10 1 2.2201 6.3215 -0.8191 11 1 0.0071 5.3441 -0.6568 12 6 3.6217 1.2048 0.0005 13 6 4.2933 0.0174 -0.0014 14 6 3.5965 -1.1889 -0.0033 15 6 2.1992 -1.1929 0.0005 16 8 1.5067 -2.3646 0.0063 17 6 2.2304 -3.5407 -0.3718 18 6 3.5746 -3.5364 0.3685 19 8 4.2921 -2.3568 -0.0138 20 1 -0.3633 0.0005 1.0276 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 3.6052 4.2831 -1.6371 24 1 4.1701 2.1353 0.0025 25 1 5.3733 0.0126 -0.0005 26 1 1.6609 -4.4278 -0.0947 27 1 2.4036 -3.5357 -1.4480 28 1 3.4013 -3.5321 1.4447 29 1 4.1490 -4.4207 0.0924 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214549333.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:50 Heat of formation + Delta-G solvation = -63.340690 kcal Electronic energy + Delta-G solvation = -14858.736650 eV Core-core repulsion = 12325.948037 eV Total energy + Delta-G solvation = -2532.788613 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01551 -36.81196 -36.19719 -33.40948 -31.18972 -30.15018 -27.87341 -25.97886 -24.97677 -23.22525 -20.11585 -19.97723 -17.75230 -17.14744 -15.90815 -15.60611 -15.11067 -14.34044 -14.11296 -13.43636 -13.31674 -13.15259 -12.62827 -12.17403 -11.83839 -11.56265 -11.32106 -11.25168 -11.08651 -10.62672 -10.44677 -10.09427 -9.91292 -9.70190 -9.24220 -8.95703 -7.17979 -6.86199 -6.75192 -4.32770 2.70865 2.89470 3.06441 3.08793 3.17622 3.90041 4.07895 4.22544 4.57559 4.97008 5.35214 5.38391 5.57616 5.77232 5.92668 5.96651 6.43333 6.61084 6.64140 6.75343 6.89173 7.05752 7.16963 7.44339 7.47377 7.66075 7.83111 8.00452 8.21821 8.45008 8.64885 8.86077 8.93892 10.17028 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050215 B = 0.008733 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.467149 B = 3205.482436 C = 3659.467475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.198 4.198 3 C 0.118 3.882 4 C -0.452 4.452 5 H 0.082 0.918 6 C 0.075 3.925 7 N -0.794 5.794 8 Si 0.911 3.089 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.265 1.265 12 C -0.155 4.155 13 C -0.094 4.094 14 C -0.082 4.082 15 C 0.078 3.922 16 O -0.317 6.317 17 C 0.024 3.976 18 C 0.026 3.974 19 O -0.320 6.320 20 H 0.040 0.960 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.282 0.718 24 H 0.129 0.871 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.869 -5.880 1.502 6.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.200 4.200 3 C 0.115 3.885 4 C -0.481 4.481 5 H 0.100 0.900 6 C -0.143 4.143 7 N -0.419 5.419 8 Si 0.735 3.265 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.190 1.190 12 C -0.174 4.174 13 C -0.113 4.113 14 C -0.126 4.126 15 C 0.034 3.966 16 O -0.232 6.232 17 C -0.053 4.053 18 C -0.050 4.050 19 O -0.237 6.237 20 H 0.059 0.941 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.147 0.853 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.712 -5.771 1.349 5.969 hybrid contribution -0.139 0.473 0.043 0.495 sum -0.851 -5.298 1.391 5.544 Atomic orbital electron populations 1.20201 0.92597 1.00614 0.99670 1.19111 0.94919 0.89646 1.16339 1.17273 0.91587 0.91028 0.88575 1.19457 1.01713 0.92041 1.34891 0.90005 1.25931 0.94314 1.01451 0.92619 1.69835 1.17638 1.31819 1.22640 0.86319 0.79822 0.80462 0.79857 1.18787 1.20351 1.18964 1.20951 0.94550 0.96066 1.05824 1.19786 0.97953 0.89996 1.03595 1.18486 0.88874 0.85347 1.19844 1.18485 0.89001 0.84821 1.04303 1.86216 1.37985 1.14047 1.84973 1.23357 0.94036 0.88446 0.99412 1.23262 0.93929 0.88844 0.98993 1.86128 1.37821 1.13815 1.85908 0.94137 0.92069 0.93906 0.90738 0.85342 0.88211 0.87966 0.91807 0.92165 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 9.16 36.01 0.33 -1.31 15 2 C -0.20 -5.03 5.95 -103.78 -0.62 -5.65 15 3 C 0.12 3.16 5.57 -106.84 -0.60 2.57 15 4 C -0.45 -11.74 8.13 -37.84 -0.31 -12.05 15 5 H 0.08 2.03 6.85 -52.49 -0.36 1.67 15 6 C 0.07 1.84 5.18 -17.34 -0.09 1.75 15 7 N -0.79 -20.21 10.87 55.54 0.60 -19.61 15 8 Si 0.91 18.35 29.59 -169.99 -5.03 13.33 15 9 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 10 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 11 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 12 C -0.15 -4.06 8.62 -39.26 -0.34 -4.40 15 13 C -0.09 -2.34 9.89 -39.84 -0.39 -2.74 15 14 C -0.08 -2.01 6.53 -38.63 -0.25 -2.26 15 15 C 0.08 1.90 6.46 -39.14 -0.25 1.65 15 16 O -0.32 -6.82 9.39 -32.69 -0.31 -7.13 15 17 C 0.02 0.39 7.26 37.40 0.27 0.66 15 18 C 0.03 0.43 7.25 37.40 0.27 0.70 15 19 O -0.32 -6.95 10.41 -32.17 -0.33 -7.29 15 20 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.06 1.34 6.77 -51.93 -0.35 0.99 15 22 H 0.04 0.89 7.49 -51.93 -0.39 0.50 15 23 H 0.28 6.54 8.30 -40.82 -0.34 6.20 15 24 H 0.13 3.41 6.13 -52.49 -0.32 3.09 15 25 H 0.10 2.26 8.06 -52.49 -0.42 1.84 15 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 15 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 245.88 15.07 3.71 3.71 Total: -1.00 -28.93 245.88 -6.43 -35.36 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.09 Total: 2.71 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.97 Total: -21.07 kcal Atomic # 7 Polarization: -20.21 SS G_CDS: 0.60 Total: -19.61 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.64 Total: -14.42 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.93 -6.43 -35.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214549333.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.977 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds