Wall clock time and date at job start Mon Mar 30 2020 03:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40772 * 120.13054 * 2 1 4 4 C 1.41201 * 120.19181 * 359.89129 * 3 2 1 5 5 H 1.08002 * 119.99926 * 25.55399 * 4 3 2 6 6 C 1.39878 * 120.00063 * 205.54895 * 4 3 2 7 7 N 1.30889 * 119.99601 * 15.42302 * 6 4 3 8 8 Si 1.86796 * 119.99928 * 195.41615 * 6 4 3 9 9 H 1.48500 * 109.47163 * 60.00252 * 8 6 4 10 10 H 1.48499 * 109.47245 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47549 * 300.00533 * 8 6 4 12 12 C 1.40809 * 119.61493 * 179.97438 * 3 2 1 13 13 C 1.36422 * 120.00958 * 0.11758 * 12 3 2 14 14 C 1.39309 * 120.49245 * 359.97438 * 13 12 3 15 15 C 1.37915 * 120.12502 * 179.97438 * 2 1 3 16 16 O 1.36106 * 119.29121 * 359.74515 * 15 2 1 17 17 C 1.43178 * 116.66987 * 162.79359 * 16 15 2 18 18 C 1.53458 * 108.24282 * 46.28016 * 17 16 15 19 19 O 1.35942 * 119.20873 * 179.58104 * 14 13 12 20 20 H 1.08997 * 109.47197 * 270.02628 * 1 2 3 21 21 H 1.09005 * 109.47115 * 30.02176 * 1 2 3 22 22 H 1.08999 * 109.47102 * 150.02658 * 1 2 3 23 23 H 0.97004 * 119.99531 * 180.02562 * 7 6 4 24 24 H 1.08001 * 119.99857 * 180.12022 * 12 3 2 25 25 H 1.08001 * 119.75133 * 180.02562 * 13 12 3 26 26 H 1.08997 * 109.71067 * 165.97592 * 17 16 15 27 27 H 1.09003 * 109.70868 * 286.60180 * 17 16 15 28 28 H 1.09005 * 109.69362 * 59.80126 * 18 17 16 29 29 H 1.09000 * 109.69858 * 180.35212 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2175 0.0000 4 6 1.5145 2.4443 -0.0023 5 1 0.5134 2.4961 0.3995 6 6 2.1187 3.5926 -0.5249 7 7 3.1860 3.4868 -1.2751 8 14 1.4021 5.2769 -0.1522 9 1 1.4090 5.5041 1.3153 10 1 2.2201 6.3215 -0.8191 11 1 0.0071 5.3441 -0.6568 12 6 3.6217 1.2048 0.0005 13 6 4.2933 0.0174 -0.0014 14 6 3.5965 -1.1889 -0.0033 15 6 2.1992 -1.1929 0.0005 16 8 1.5067 -2.3646 0.0063 17 6 2.2304 -3.5407 -0.3718 18 6 3.5746 -3.5364 0.3685 19 8 4.2921 -2.3568 -0.0138 20 1 -0.3633 0.0005 1.0276 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5134 23 1 3.6052 4.2831 -1.6371 24 1 4.1701 2.1353 0.0025 25 1 5.3733 0.0126 -0.0005 26 1 1.6609 -4.4278 -0.0947 27 1 2.4036 -3.5357 -1.4480 28 1 3.4013 -3.5321 1.4447 29 1 4.1490 -4.4207 0.0924 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214549333.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:49 Heat of formation + Delta-G solvation = -80.511755 kcal Electronic energy + Delta-G solvation = -14859.481243 eV Core-core repulsion = 12325.948037 eV Total energy + Delta-G solvation = -2533.533206 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.68718 -38.62090 -37.85781 -35.25662 -33.03133 -31.74617 -29.59547 -27.79347 -26.76131 -24.86762 -21.94942 -21.68659 -19.50310 -18.84352 -17.59195 -17.30823 -16.86587 -15.99607 -15.67114 -15.05448 -15.03411 -14.82288 -14.29883 -13.98385 -13.60056 -13.24686 -13.07201 -12.91327 -12.76417 -12.24664 -12.03615 -11.73330 -11.66963 -11.49047 -11.00586 -10.77518 -9.08018 -8.72244 -8.60045 -6.27205 0.85835 0.98055 1.42394 1.52820 1.55967 2.22636 2.47807 2.69023 2.73683 3.63242 3.65340 4.07856 4.13184 4.23863 4.54053 4.64095 4.68437 4.78441 4.82069 5.01401 5.07151 5.19893 5.29584 5.60827 5.65265 5.77931 5.96390 6.10199 6.38351 6.55043 6.80442 6.93781 7.06738 8.35118 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.050215 B = 0.008733 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.467149 B = 3205.482436 C = 3659.467475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.222 4.222 3 C 0.089 3.911 4 C -0.480 4.480 5 H 0.085 0.915 6 C 0.035 3.965 7 N -0.825 5.825 8 Si 0.985 3.015 9 H -0.260 1.260 10 H -0.269 1.269 11 H -0.258 1.258 12 C -0.176 4.176 13 C -0.106 4.106 14 C -0.085 4.085 15 C 0.073 3.927 16 O -0.327 6.327 17 C 0.015 3.985 18 C 0.018 3.982 19 O -0.335 6.335 20 H 0.051 0.949 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.289 0.711 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.151 0.849 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -6.834 1.717 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.224 4.224 3 C 0.087 3.913 4 C -0.509 4.509 5 H 0.103 0.897 6 C -0.180 4.180 7 N -0.451 5.451 8 Si 0.806 3.194 9 H -0.184 1.184 10 H -0.194 1.194 11 H -0.182 1.182 12 C -0.195 4.195 13 C -0.124 4.124 14 C -0.129 4.129 15 C 0.029 3.971 16 O -0.242 6.242 17 C -0.060 4.060 18 C -0.057 4.057 19 O -0.252 6.252 20 H 0.070 0.930 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.134 0.866 25 H 0.131 0.869 26 H 0.169 0.831 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.352 -6.765 1.562 7.074 hybrid contribution 0.107 0.542 -0.038 0.553 sum -1.246 -6.223 1.524 6.527 Atomic orbital electron populations 1.20143 0.90742 1.00867 1.00420 1.19529 0.96603 0.89861 1.16434 1.17638 0.92079 0.92198 0.89430 1.19709 1.02227 0.92848 1.36073 0.89689 1.26803 0.94476 1.05020 0.91731 1.69896 1.18782 1.33277 1.23172 0.85203 0.79210 0.75369 0.79664 1.18415 1.19385 1.18234 1.20915 0.94784 0.96200 1.07650 1.19980 0.98756 0.90183 1.03518 1.18586 0.89139 0.86337 1.18869 1.18561 0.89154 0.85895 1.03514 1.86178 1.38813 1.14366 1.84887 1.23821 0.94588 0.87911 0.99667 1.23725 0.94433 0.88121 0.99443 1.86085 1.38772 1.14270 1.86042 0.93030 0.92484 0.92816 0.90020 0.86573 0.86890 0.83121 0.91652 0.91651 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.86 9.16 71.24 0.65 -2.21 15 2 C -0.22 -11.40 5.95 -19.32 -0.11 -11.52 15 3 C 0.09 4.90 5.57 -21.30 -0.12 4.79 15 4 C -0.48 -25.44 8.13 23.40 0.19 -25.25 15 5 H 0.09 4.29 6.85 -2.91 -0.02 4.27 15 6 C 0.03 1.72 5.18 85.23 0.44 2.16 15 7 N -0.83 -42.89 10.87 21.82 0.24 -42.65 15 8 Si 0.98 37.52 29.59 68.60 2.03 39.55 15 9 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 10 H -0.27 -9.76 7.11 99.48 0.71 -9.06 15 11 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 12 C -0.18 -9.58 8.62 22.47 0.19 -9.38 15 13 C -0.11 -5.35 9.89 22.10 0.22 -5.13 15 14 C -0.09 -4.16 6.53 22.89 0.15 -4.01 15 15 C 0.07 3.56 6.46 22.55 0.15 3.71 15 16 O -0.33 -13.46 9.39 -82.69 -0.78 -14.24 15 17 C 0.02 0.45 7.26 72.14 0.52 0.97 15 18 C 0.02 0.53 7.25 72.14 0.52 1.06 15 19 O -0.33 -14.01 10.41 -80.84 -0.84 -14.85 15 20 H 0.05 2.10 8.14 -2.39 -0.02 2.09 15 21 H 0.06 2.50 6.77 -2.38 -0.02 2.49 15 22 H 0.05 2.18 7.49 -2.39 -0.02 2.16 15 23 H 0.29 13.58 8.30 -92.71 -0.77 12.82 15 24 H 0.12 6.46 6.13 -2.91 -0.02 6.44 15 25 H 0.11 5.22 8.06 -2.91 -0.02 5.19 15 26 H 0.15 2.98 8.14 -2.39 -0.02 2.96 15 27 H 0.07 1.93 8.14 -2.39 -0.02 1.92 15 28 H 0.07 1.89 8.14 -2.38 -0.02 1.88 15 29 H 0.15 2.96 8.14 -2.39 -0.02 2.95 15 Total: -1.00 -63.29 245.88 4.61 -58.68 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 1.16 Total: 18.34 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 2.80 Total: -44.82 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.24 Total: -42.65 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.62 Total: -29.09 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -63.29 4.61 -58.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214549333.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal (2) G-P(sol) polarization free energy of solvation -63.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds