Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86795 * 120.00225 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47040 * 300.00148 * 3 2 1 6 6 H 1.48505 * 109.47172 * 60.00080 * 3 2 1 7 7 C 1.39931 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 193.80554 * 7 2 1 9 9 C 1.41410 * 120.00098 * 13.80524 * 7 2 1 10 10 C 1.40767 * 120.21509 * 26.01572 * 9 7 2 11 11 C 1.37627 * 119.85198 * 180.02562 * 10 9 7 12 12 C 1.38566 * 120.30927 * 359.72905 * 11 10 9 13 13 C 1.39122 * 120.43972 * 0.54879 * 12 11 10 14 14 O 1.35896 * 119.93042 * 179.72169 * 13 12 11 15 15 C 1.42898 * 117.00125 * 5.71218 * 14 13 12 16 16 C 1.54030 * 113.81900 * 157.43893 * 15 14 13 17 17 O 1.44178 * 85.66497 * 136.73837 * 16 15 14 18 18 C 1.44442 * 93.22915 * 335.92708 * 17 16 15 19 19 C 1.38136 * 120.13317 * 359.45170 * 13 12 11 20 20 H 0.96998 * 119.99607 * 359.97438 * 1 2 3 21 21 H 1.07993 * 120.07150 * 0.02562 * 10 9 7 22 22 H 1.08004 * 119.84612 * 180.02562 * 11 10 9 23 23 H 1.07994 * 119.78168 * 180.29681 * 12 11 10 24 24 H 1.09004 * 113.08706 * 25.53081 * 15 14 13 25 25 H 1.09000 * 113.86676 * 250.95000 * 16 15 14 26 26 H 1.09006 * 113.86246 * 22.52430 * 16 15 14 27 27 H 1.08999 * 113.74745 * 269.91892 * 18 17 16 28 28 H 1.08995 * 114.05769 * 138.26511 * 18 17 16 29 29 H 1.07998 * 120.15122 * 180.25481 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0646 -1.2254 0.2237 9 6 1.3315 -2.4189 -0.2911 10 6 0.1699 -2.4057 -1.0861 11 6 -0.4829 -3.5849 -1.3649 12 6 0.0012 -4.7858 -0.8713 13 6 1.1449 -4.8127 -0.0797 14 8 1.6073 -5.9956 0.4036 15 6 0.9460 -7.1814 -0.0419 16 6 1.8057 -8.4542 0.0745 17 8 0.6123 -9.0817 0.5853 18 6 0.0439 -7.8290 1.0258 19 6 1.8144 -3.6400 0.2115 20 1 -0.4849 0.8401 0.0004 21 1 -0.2082 -1.4725 -1.4763 22 1 -1.3739 -3.5747 -1.9752 23 1 -0.5151 -5.7065 -1.0994 24 1 0.4639 -7.0631 -1.0123 25 1 2.1369 -8.8519 -0.8848 26 1 2.6108 -8.3772 0.8052 27 1 0.3097 -7.5619 2.0486 28 1 -1.0221 -7.7287 0.8221 29 1 2.7046 -3.6611 0.8226 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214550079.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = -30.959191 kcal Electronic energy + Delta-G solvation = -14241.511265 eV Core-core repulsion = 11710.126819 eV Total energy + Delta-G solvation = -2531.384446 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.41020 -38.23828 -36.11016 -33.41301 -30.03171 -29.26108 -27.69182 -26.51994 -25.36897 -21.72225 -20.99249 -19.80041 -18.23534 -16.47876 -16.33137 -15.90291 -15.37030 -14.96625 -14.39148 -13.90253 -13.36626 -13.22319 -12.57606 -12.33904 -11.94735 -11.69236 -11.36204 -11.19622 -11.06256 -10.60664 -10.46694 -10.06456 -9.95557 -9.65623 -9.36736 -9.18475 -7.56991 -6.96753 -6.77866 -4.46640 2.70063 2.99071 3.05130 3.10601 3.15018 3.69332 3.85590 3.94534 4.42965 4.60429 5.02656 5.27614 5.39917 5.52432 5.63296 5.80038 5.97969 6.06885 6.12990 6.28073 6.83651 6.91699 6.96887 7.16526 7.37861 7.66390 7.74436 7.98922 8.09490 8.38411 8.63231 8.83666 8.90308 10.13981 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.067437 B = 0.006099 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.102202 B = 4590.080626 C = 4830.427372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.080 0.920 9 C 0.135 3.865 10 C -0.184 4.184 11 C -0.078 4.078 12 C -0.321 4.321 13 C 0.134 3.866 14 O -0.315 6.315 15 C 0.021 3.979 16 C 0.041 3.959 17 O -0.379 6.379 18 C 0.019 3.981 19 C -0.250 4.250 20 H 0.280 0.720 21 H 0.122 0.878 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 -6.859 -0.672 6.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.132 3.868 10 C -0.203 4.203 11 C -0.096 4.096 12 C -0.340 4.340 13 C 0.091 3.909 14 O -0.230 6.230 15 C -0.037 4.037 16 C -0.036 4.036 17 O -0.299 6.299 18 C -0.058 4.058 19 C -0.270 4.270 20 H 0.091 0.909 21 H 0.140 0.860 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.568 -6.984 -0.515 7.026 hybrid contribution 0.056 0.881 -0.085 0.887 sum 0.623 -6.102 -0.601 6.163 Atomic orbital electron populations 1.69831 1.07563 1.29147 1.35288 1.25940 0.94821 1.01430 0.92176 0.86193 0.80907 0.80660 0.78579 1.18338 1.19683 1.19913 1.19628 0.96904 0.90539 1.41614 0.90178 1.17400 0.90873 0.91168 0.87319 1.21364 0.99320 0.96844 1.02810 1.20475 0.97883 0.92721 0.98554 1.20400 1.02316 0.97589 1.13728 1.18738 0.93628 0.83823 0.94748 1.86085 1.57362 1.12732 1.66779 1.25820 0.93894 0.84601 0.99372 1.24272 0.90123 0.89066 1.00160 1.89705 1.32662 1.27729 1.79772 1.24673 0.99785 0.81821 0.99505 1.20310 1.04992 0.90379 1.11359 0.90855 0.85977 0.89123 0.88850 0.87349 0.88534 0.89218 0.89218 0.88734 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.25 10.82 55.55 0.60 -19.65 15 2 C 0.07 1.84 5.21 -17.34 -0.09 1.75 15 3 Si 0.91 18.40 29.58 -169.99 -5.03 13.37 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 7 C -0.46 -12.08 9.06 -37.74 -0.34 -12.42 15 8 H 0.08 2.03 7.88 -52.48 -0.41 1.62 15 9 C 0.14 3.62 5.57 -106.84 -0.60 3.03 15 10 C -0.18 -4.78 8.68 -38.85 -0.34 -5.11 15 11 C -0.08 -1.82 10.02 -39.68 -0.40 -2.22 15 12 C -0.32 -7.16 9.03 -39.13 -0.35 -7.51 15 13 C 0.13 3.10 6.67 -39.29 -0.26 2.84 15 14 O -0.31 -6.38 10.16 -19.41 -0.20 -6.58 15 15 C 0.02 0.34 3.92 -25.65 -0.10 0.24 15 16 C 0.04 0.54 9.04 37.61 0.34 0.88 15 17 O -0.38 -5.67 12.47 -35.23 -0.44 -6.11 15 18 C 0.02 0.27 9.05 37.61 0.34 0.62 15 19 C -0.25 -6.35 9.73 -38.73 -0.38 -6.72 15 20 H 0.28 6.47 8.30 -40.82 -0.34 6.13 15 21 H 0.12 3.24 6.12 -52.49 -0.32 2.92 15 22 H 0.09 1.87 8.06 -52.48 -0.42 1.45 15 23 H 0.09 1.82 5.89 -52.49 -0.31 1.51 15 24 H 0.11 1.71 5.97 -51.93 -0.31 1.40 15 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.09 1.24 8.14 -51.93 -0.42 0.81 15 29 H 0.10 2.46 8.06 -52.49 -0.42 2.03 15 LS Contribution 253.17 15.07 3.82 3.82 Total: -1.00 -28.04 253.17 -6.45 -34.49 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.02 Total: 5.29 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -2.17 Total: -24.64 kcal Atomic # 7 Polarization: -20.25 SS G_CDS: 0.60 Total: -19.65 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.64 Total: -12.69 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.04 -6.45 -34.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214550079.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.530 kcal (2) G-P(sol) polarization free energy of solvation -28.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds